View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_42 (Length: 243)
Name: NF14145_high_42
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 43463575 - 43463790
Alignment:
| Q |
19 |
atagattcattatacattttcatattttctttatactagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaa |
118 |
Q |
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| T |
43463575 |
atagattcattatacattttcatattttctttatactagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaa |
43463674 |
T |
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| Q |
119 |
aaattacacatttaccgcttgatttttaatcactaaacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatgatg |
218 |
Q |
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| T |
43463675 |
aaattacacatttaccgcttgatttttaatcactaaacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatgatg |
43463774 |
T |
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| Q |
219 |
attttccaatattctt |
234 |
Q |
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|||||||||| ||||| |
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| T |
43463775 |
attttccaatcttctt |
43463790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 43454853 - 43455069
Alignment:
| Q |
20 |
tagattcattatacattttcatattttctttatactagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaaa |
119 |
Q |
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|||||||| || ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
43454853 |
tagattcaatacacattttgatattttctttattctagtgctttttattgtttatggttgttgcatcttcagctattgcaattgtttttaaga-agaaaa |
43454951 |
T |
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| Q |
120 |
aat---tacacatttaccgcttgatttttaatcactaaacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatga |
216 |
Q |
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||| || ||||||| |||||||||||| ||||||||| | |||||||||||||||||||| |||||||| || |||| |||| | ||||||||||| |
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| T |
43454952 |
aataaataaacatttagcgcttgatttttcatcactaaatctgtcgcattaattgtttaattatgcagaacatgaatttttgttactaaattgtgaatga |
43455051 |
T |
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| Q |
217 |
tgattttccaatattctt |
234 |
Q |
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|||| ||||||| ||||| |
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| T |
43455052 |
tgatgttccaatcttctt |
43455069 |
T |
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