View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_high_46 (Length: 233)

Name: NF14145_high_46
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_high_46
NF14145_high_46
[»] chr7 (3 HSPs)
chr7 (1-233)||(32116315-32116547)
chr7 (149-233)||(46881335-46881419)
chr7 (137-181)||(39554668-39554712)
[»] chr2 (7 HSPs)
chr2 (153-229)||(40039193-40039269)
chr2 (138-198)||(43696955-43697015)
chr2 (137-198)||(43711523-43711584)
chr2 (153-229)||(36080683-36080759)
chr2 (153-210)||(17792653-17792710)
chr2 (164-233)||(33012204-33012273)
chr2 (149-229)||(11581011-11581091)
[»] chr8 (3 HSPs)
chr8 (149-232)||(10633070-10633153)
chr8 (159-210)||(35778977-35779028)
chr8 (169-233)||(7256703-7256767)
[»] chr1 (7 HSPs)
chr1 (137-210)||(29802805-29802878)
chr1 (134-233)||(50107779-50107880)
chr1 (153-229)||(32301498-32301574)
chr1 (112-207)||(30084851-30084946)
chr1 (134-232)||(39080781-39080879)
chr1 (149-194)||(10188756-10188801)
chr1 (153-233)||(26097890-26097970)
[»] chr5 (1 HSPs)
chr5 (153-223)||(17523407-17523477)
[»] chr6 (3 HSPs)
chr6 (149-194)||(8978621-8978666)
chr6 (164-233)||(15590004-15590073)
chr6 (153-229)||(31801116-31801192)
[»] chr3 (1 HSPs)
chr3 (153-221)||(566316-566384)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32116315 - 32116547
Alignment:
Q  1 ataatacaaatttaaagtttttaaaaagaataatgataatcttccaacaaacgcaatttcatatgttaagagcatnnnnnnnnnnnngtacatagactta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||            ||| |||||||||    
T  32116315 ataatacaaatttaaagtttttaaaaagaataatgataatcttcgaacaaacgcaatttcatatattaagagcatcaaaaagacaaagtagatagactta 32116414  T
Q  101 taaccatgactatatttatgtctttaaatttggaatgttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagt 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  32116415 taaccatgactatatttatgtctttgaatttggaatgttgacggcattaaaatcatttattgaatttgcacttgatcaaaactaatttttcaacgtgagt 32116514  T
Q  201 aaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    ||||||||||||||| |||||||||||||||||    
T  32116515 aaaataaacaacgcactaagacgaaaaatcaaa 32116547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 46881419 - 46881335
Alignment:
Q  149 aaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    ||||||||| |||||||||| ||||||||||||||| | ||||||| | | | |||||||||  ||| ||||||| |||||||||    
T  46881419 aaaatcattgattgaatttgaacttgatcaaaactaatatttcaacctaaatcaaataaacattgcactaagacggaaaatcaaa 46881335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 39554712 - 39554668
Alignment:
Q  137 gttgacgatattaaaatcatttattgaatttgcacttgatcaaaa 181  Q
    ||||||||||||||||| ||| ||||||||||||||  |||||||    
T  39554712 gttgacgatattaaaattattgattgaatttgcactaaatcaaaa 39554668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 40039193 - 40039269
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaat 229  Q
    ||||| ||||||| ||||||||||||| |||| ||||||||| ||| ||||||||||| |||| ||||||| |||||    
T  40039193 tcattgattgaatctgcacttgatcaatactaatttttcaacctgaataaaataaacaccgcactaagacggaaaat 40039269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 43697015 - 43696955
Alignment:
Q  138 ttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatga 198  Q
    |||| ||||| ||| ||||| ||||||||||||||| |||||||||| |||||||||||||    
T  43697015 ttgatgatatcaaagtcattgattgaatttgcacttaatcaaaactaatttttcaacatga 43696955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 43711584 - 43711523
Alignment:
Q  137 gttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatga 198  Q
    ||||||||||| ||| ||||| ||||||| |||||||||||||||||| | ||| |||||||    
T  43711584 gttgacgatatcaaagtcattgattgaatctgcacttgatcaaaactaatcttttaacatga 43711523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 36080759 - 36080683
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaat 229  Q
    ||||| |||| |||| |||||||||||||||||| ||||||  ||| | ||||||||| || |||||||||| ||||    
T  36080759 tcattaattggatttacacttgatcaaaactactctttcaatttgaatcaaataaacaccgtattaagacgagaaat 36080683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 17792710 - 17792653
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaaca 210  Q
    ||||| ||||||| |||| ||||||||||||| | ||||||||||| | |||||||||    
T  17792710 tcattgattgaatctgcatttgatcaaaactaatctttcaacatgaatcaaataaaca 17792653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 33012273 - 33012204
Alignment:
Q  164 atttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    ||||||||||||||||| ||| | ||||||| ||| | ||||||||| |||| |||||||  ||||||||    
T  33012273 atttgcacttgatcaaagctaatctttcaacctgaattaaataaacaccgcactaagacgggaaatcaaa 33012204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 11581011 - 11581091
Alignment:
Q  149 aaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaat 229  Q
    ||||||||| |||||||||||||||||| ||| ||| | ||||||| ||| | ||||||| | |||| ||| |||| ||||    
T  11581011 aaaatcattgattgaatttgcacttgatgaaacctaatctttcaacctgaatcaaataaataccgcactaatacgagaaat 11581091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 10633070 - 10633153
Alignment:
Q  149 aaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaa 232  Q
    ||||||||| ||||||| | |||||||||||| ||| | ||||||| ||| ||||||||||| |||| ||||||| ||||||||    
T  10633070 aaaatcattgattgaatctacacttgatcaaagctaatctttcaacctgaataaaataaacaccgcactaagacggaaaatcaa 10633153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 35778977 - 35779028
Alignment:
Q  159 attgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaaca 210  Q
    ||||||| |||||||||||||||||| ||||||||| | | |||||||||||    
T  35778977 attgaatatgcacttgatcaaaactattttttcaacctaaataaaataaaca 35779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 7256703 - 7256767
Alignment:
Q  169 cacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    |||||||| ||||||||| ||||||| ||| | ||||||||||||||  || ||| |||||||||    
T  7256703 cacttgataaaaactactatttcaacttgaatcaaataaacaacgcacaaaaacggaaaatcaaa 7256767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 29802878 - 29802805
Alignment:
Q  137 gttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaaca 210  Q
    |||||||| |||||| ||||| |||| || |||||||||||||||||||| |||||||| || | |||||||||    
T  29802878 gttgacgacattaaagtcattgattggatctgcacttgatcaaaactactctttcaacaagaatcaaataaaca 29802805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 50107779 - 50107880
Alignment:
Q  134 aatgttgacgatattaaaatcatttattgaatttgcacttgatcaaaac--tactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatca 231  Q
    ||||||||||| |  ||| ||||| |||||||||||||||||||||| |  || ||||||||||| | | ||||||||| |||| |||||||  ||||||    
T  50107779 aatgttgacgacacaaaagtcattgattgaatttgcacttgatcaaagctataatttttcaacataaatcaaataaacaccgcactaagacgggaaatca 50107878  T
Q  232 aa 233  Q
    ||    
T  50107879 aa 50107880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 32301574 - 32301498
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaat 229  Q
    |||||||||||||   |||||||||||| ||| | ||||||| ||| | ||||||||| ||||||||||||| ||||    
T  32301574 tcatttattgaataaacacttgatcaaagctaatctttcaacctgaatcaaataaacaccgcattaagacgagaaat 32301498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 30084851 - 30084946
Alignment:
Q  112 atatttatgtctttaaatttggaatgttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataa 207  Q
    ||||||||||||| |||| || || ||||||||    |||| |||| ||||||||||||| | |||||||||| | ||| ||||||| ||||||||    
T  30084851 atatttatgtcttcaaatctgcaacgttgacgacgcaaaaaacattcattgaatttgcacatcatcaaaactaatcttttaacatgaataaaataa 30084946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 39080781 - 39080879
Alignment:
Q  134 aatgttgacgatattaaaatcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaa 232  Q
    |||||||| || | |||| ||| | ||||||| | |||||| ||||||||| | ||| ||||||| | |||||||||  ||| ||||||||||||||||    
T  39080781 aatgttgatgacaataaagtcactgattgaatctacacttgctcaaaactaatcttttaacatgaatcaaataaacactgcactaagacgaaaaatcaa 39080879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10188756 - 10188801
Alignment:
Q  149 aaaatcatttattgaatttgcacttgatcaaaactactttttcaac 194  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||||||    
T  10188756 aaaatcattaattgaatttgcacttaatcataactaatttttcaac 10188801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 26097890 - 26097970
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    ||||| || |||| |||||||| ||||| ||| ||||||||| ||| | ||||||| | || | |||||||||||||||||    
T  26097890 tcattaatggaatctgcacttgctcaaagctaatttttcaacctgaatcaaataaataccgtactaagacgaaaaatcaaa 26097970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 17523407 - 17523477
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacg 223  Q
    ||||| |||||||||||||||||||||||||| | |||| || ||| | ||||||||| |||| |||||||    
T  17523407 tcattaattgaatttgcacttgatcaaaactaatctttcgacctgaatcaaataaacaccgcaataagacg 17523477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 8978621 - 8978666
Alignment:
Q  149 aaaatcatttattgaatttgcacttgatcaaaactactttttcaac 194  Q
    ||||||||| ||||||| |||||||||||||||||| | |||||||    
T  8978621 aaaatcattgattgaatatgcacttgatcaaaactaatctttcaac 8978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 15590004 - 15590073
Alignment:
Q  164 atttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaatcaaa 233  Q
    ||||||||||| ||||| ||| | ||||||| ||| | ||||||||| ||||||||||||  ||||||||    
T  15590004 atttgcacttgctcaaagctaatctttcaacctgaatcaaataaacaccgcattaagacgggaaatcaaa 15590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 31801116 - 31801192
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaagacgaaaaat 229  Q
    ||||| |||||||||||||||||||||||||| | ||| |||  ||   ||||||||| ||| ||||||||| ||||    
T  31801116 tcattgattgaatttgcacttgatcaaaactaatctttaaactcgaagcaaataaacaccgctttaagacgataaat 31801192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 566384 - 566316
Alignment:
Q  153 tcatttattgaatttgcacttgatcaaaactactttttcaacatgagtaaaataaacaacgcattaaga 221  Q
    ||||| ||||||| |||| ||||| ||| ||| | ||||||| ||| | ||||||||||||||||||||    
T  566384 tcattgattgaatctgcaattgataaaagctagtctttcaacctgaatcaaataaacaacgcattaaga 566316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University