View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_10 (Length: 519)
Name: NF14145_low_10
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 3 - 496
Target Start/End: Complemental strand, 21360209 - 21359700
Alignment:
| Q |
3 |
aaaatgatgattttaatgggcttacaatggaattggtctattctggagaaagcaaaagtaatgtaaaaaagaa-------ccctacaaatacaatcatga |
95 |
Q |
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|||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21360209 |
aaaatgatgattttaatggggttacaatggaattggtcttttatggagaaagcaaaagtaatgtaaaaaagaaaaaataaccctacaaatacaatcatga |
21360110 |
T |
|
| Q |
96 |
agtttg---------aagatatctccactcatacaaaccaattacttgatcagccacaccccacataatggcctgtccaggtgggattctcatgagacga |
186 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21360109 |
agtttggagagtttgaagatatctccgctcatacaaaccaattacttgatcagccacaccccacataatggcctgtccaggtgggattcgcatgagacga |
21360010 |
T |
|
| Q |
187 |
ggtaacagacctttccataatgcaagaattccttcttctgcatatattgttctgatggcatggatcatacccttgtacttcacttcacctccctctctac |
286 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21360009 |
ggtaacaggcctttccataatgcaagaactccttcttctgcatatattgttctgatggcatggatcatacccttgtacttcacttcacctccctctctac |
21359910 |
T |
|
| Q |
287 |
cctgagccatcaaccttgttttcactacatcaaagggaccagtgcaaataggacccgctgtccctgcaaggaatcctgaaatcatcgactgccatggtag |
386 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21359909 |
cctgagccatcaaccttgttttcactacatcgaagggaccggtgcaaataggacctgccgtccctgcaaggaatcctgaaatcatcgactgccatggtag |
21359810 |
T |
|
| Q |
387 |
aagaactctaccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcggtaaacattacagattgatttgttccattacgcattata |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
21359809 |
aagaactctaccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcagtaaacatgacagattgatttgttccattacgcattata |
21359710 |
T |
|
| Q |
487 |
gtaggagtaa |
496 |
Q |
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|||||||||| |
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| T |
21359709 |
gtaggagtaa |
21359700 |
T |
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