View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14145_low_12 (Length: 490)
Name: NF14145_low_12
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 471
Target Start/End: Complemental strand, 48108063 - 48107611
Alignment:
| Q |
10 |
catcatcacctctttccttttatttatctcaggtttcaatctctccctctct--ataattcagtgctacaattcttttaatatctaacatatatatcttc |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48108063 |
catcaccacctctttccttttatttatctcaggtttcaatctctccctctctctataattcagtgctactattcttttaatatctaacatatatatcttc |
48107964 |
T |
|
| Q |
108 |
acaccatatatgcagggctaggcgttcattctttggactacgattattttgctactattgaggtaataatattgacacatcttttaatatgattattaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48107963 |
acaccatatatgcagggctaggcgttcattctttggactatgattattttgctactattgaggtaat------gacacatcttttaatatgattattaat |
48107870 |
T |
|
| Q |
208 |
tcttaaacattatattgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaatt |
307 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107869 |
tcttaaacatt-----gcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaatt |
48107775 |
T |
|
| Q |
308 |
ataataaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattg |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107774 |
atagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattg |
48107675 |
T |
|
| Q |
408 |
ttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggatt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107674 |
ttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggatt |
48107611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 247 - 447
Target Start/End: Complemental strand, 48064166 - 48063966
Alignment:
| Q |
247 |
atgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttgg |
346 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||| | || |||||||||||||| || |||||| ||||| | |||||||||||||||||| |||||||| |
|
|
| T |
48064166 |
atgccttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttgg |
48064067 |
T |
|
| Q |
347 |
acagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcac |
446 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||| |||| |||| |||| ||| |||| |||| |
|
|
| T |
48064066 |
agagtgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcac |
48063967 |
T |
|
| Q |
447 |
a |
447 |
Q |
| |
|
| |
|
|
| T |
48063966 |
a |
48063966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 221 - 447
Target Start/End: Complemental strand, 48101445 - 48101219
Alignment:
| Q |
221 |
attgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccg |
320 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| ||| ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | ||||| | | |
|
|
| T |
48101445 |
attgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccag |
48101346 |
T |
|
| Q |
321 |
gatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaag |
420 |
Q |
| |
|
||||||||||||||||| | || |||| ||| ||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
48101345 |
gatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacag |
48101246 |
T |
|
| Q |
421 |
aacacaatcattagatagtttttcaca |
447 |
Q |
| |
|
||||||| |||| |||||||||||||| |
|
|
| T |
48101245 |
aacacaaccattggatagtttttcaca |
48101219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 449
Target Start/End: Complemental strand, 48068818 - 48068620
Alignment:
| Q |
251 |
cttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacag |
350 |
Q |
| |
|
||||||||||| |||||| | ||||||||| ||||||||||||||||| || |||||| ||||| | ||||||||||||||||| ||| |||||| | |
|
|
| T |
48068818 |
cttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacgg |
48068719 |
T |
|
| Q |
351 |
tatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaa |
449 |
Q |
| |
|
| |||| |||||||||| ||||||| | ||||||||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
48068718 |
tgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaa |
48068620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University