View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_18 (Length: 410)
Name: NF14145_low_18
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 128 - 408
Target Start/End: Complemental strand, 38538075 - 38537797
Alignment:
| Q |
128 |
gttggtttaagttcagctatttgtttgattaataattgtgtgctagtaattttaaatctgtcaacttaaaaccctcttatggatctaacttaaattctag |
227 |
Q |
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| T |
38538075 |
gttggtttaagttcagctatttgtttgattaataattgtgtgctggtaactttaaatctgtcaacttaaaaccctcatatggatctaacttaaattctag |
38537976 |
T |
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| Q |
228 |
attgattactcaagttcattttttgaagtcaaacatgctcaatgggacattcatttgagatggtcaatgtcaagtttctagttatcataaatctacccnn |
327 |
Q |
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| T |
38537975 |
attgattagtcaagttcattttttgaagtcaaacatgctcaatgggagattcatttgagatggtcaatatcaaatttctagttatcagaaa-ctaccc-a |
38537878 |
T |
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| Q |
328 |
nnnnnntactattcacttttaggtttaggggtgtccacctcaaatctgtctaatacgattgattattcttggtaaattggt |
408 |
Q |
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| T |
38537877 |
aaaaaatactattcacttttaggtttaggggtgtccacctcaaatctgtctaaaacgattgattattcttagtaaattggt |
38537797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 38538182 - 38538133
Alignment:
| Q |
21 |
acaatgaaagaaagatgtatccaactcaaacctatctatattagtgtata |
70 |
Q |
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| T |
38538182 |
acaatgaaagaaagatgtatccaactcaaacctatctatattagtgtata |
38538133 |
T |
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