View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14145_low_20 (Length: 407)
Name: NF14145_low_20
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_20 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 5351515 - 5351115
Alignment:
| Q |
1 |
gacttgatgttttcgtaaaatgcacnnnnnnnnngttgctgcattctatatactagtaattttaacttaaaatttggatttcaggattgtgtcatgagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351515 |
gacttgatgttttcgtaaaatgcactttttttttgttgctgcattctatata------attttaacttaaaatttggatttcaggattgtgtcatgagtg |
5351422 |
T |
|
| Q |
101 |
ctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgataaaattctggtaacattttctggatatgttggtaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
5351421 |
ctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgataaaattctggtaacattttctgaatatgttgataaata |
5351322 |
T |
|
| Q |
201 |
gcattttttatttatttaaataaataagaaaacatatataactttgctttttataggttatggagggtggagttattaaccaagcaggaagccatgagga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5351321 |
gcattttttatttatttaaataaataagaaaacatatataactttgctttttataggttatggagggtggagttattaatcaagcaggaagccatgagga |
5351222 |
T |
|
| Q |
301 |
attgtcgacatctggaacaacctttgaacaacttatgaatgctcatagagatgcaatatctgtaataggtactacaagtagtcaaaacaaaggaaaaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351221 |
attgtcgacatctggaacaacctttgaacaacttatgaatgctcatagagatgcaatatctgtaataggtactacaagtagtcaaaacaaaggaaaaagt |
5351122 |
T |
|
| Q |
401 |
caagaaa |
407 |
Q |
| |
|
||||||| |
|
|
| T |
5351121 |
caagaaa |
5351115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 5290088 - 5290007
Alignment:
| Q |
82 |
caggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
163 |
Q |
| |
|
|||||||||||||||| |||| | | ||||||||||||||| ||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
5290088 |
caggattgtgtcatgactgctttaagagagaaaacagtcattctagttactcatcaagtggagtttctctcagaagttgata |
5290007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 5282087 - 5282006
Alignment:
| Q |
82 |
caggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
163 |
Q |
| |
|
||||| |||||||||| |||| | | ||||||||||||||| ||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
5282087 |
caggactgtgtcatgaatgctttaagagagaaaacagtcattctagttactcatcaagtggagtttctctcagaagttgata |
5282006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 5314085 - 5314136
Alignment:
| Q |
112 |
aaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
163 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
5314085 |
aaaacagtcattttagtgacacatcaagtggagtttctctcagaagttgata |
5314136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 31526241 - 31526186
Alignment:
| Q |
94 |
atgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttct |
149 |
Q |
| |
|
|||| |||||| | ||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
31526241 |
atgactgctctaagagagaaaacagtcattcttgtgacacatcaagtggagtttct |
31526186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University