View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_25 (Length: 363)
Name: NF14145_low_25
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 39906244 - 39906582
Alignment:
| Q |
14 |
attatacttcatgatctgtgatgaaaattaacacgcatgcctctacgcatgagtcagattagtagcaaccnnnnnnnnnn--caccatttgttgcaggtg |
111 |
Q |
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| T |
39906244 |
attatatttcatgatctgtgatgaaaattaacacgcatacctctacgcatgagccagattagtagcaaccaaaaaaaaaaaacaccatttgttgcaggtg |
39906343 |
T |
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| Q |
112 |
agtattattatgtacta---tcacacgtttataggnnnnnnncaatgcaatatctaccacaaatatgtatgtaaatcttcaagccaagacagagatgcca |
208 |
Q |
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| T |
39906344 |
agtattattatgtactactatcacacgtttataggaaaaaa-caatgcaatatctaccacaaatatgtatgtaaatcttcaagccaagacagagatgcca |
39906442 |
T |
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| Q |
209 |
tttccacattcttgggaagatgaaggctgcaaggcacggatgcgaatgttgtatttcacatgagttggtgcttctgttgaaggagatggttctgctccat |
308 |
Q |
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| T |
39906443 |
tttccacattcttgggaagatgaaggctgcaaggcacggatgcgaatgttgtatttcacatgagttggtgcttctgttgaaggagatggttctgctccat |
39906542 |
T |
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| Q |
309 |
ttgatgatactagaataaaagatggtgatgatgagttgtt |
348 |
Q |
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| T |
39906543 |
ttgatgatactagaataaaagatggtgatgatgagttgtt |
39906582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 11142649 - 11142678
Alignment:
| Q |
47 |
cgcatgcctctacgcatgagtcagattagt |
76 |
Q |
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| T |
11142649 |
cgcatgcctctacgcatgagtcagattagt |
11142678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 2784974 - 2785003
Alignment:
| Q |
47 |
cgcatgcctctacgcatgagtcagattagt |
76 |
Q |
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| T |
2784974 |
cgcatgcctctacgcatgagtcagattagt |
2785003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 7616964 - 7616992
Alignment:
| Q |
48 |
gcatgcctctacgcatgagtcagattagt |
76 |
Q |
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| T |
7616964 |
gcatgcctctacgcatgagtcagattagt |
7616992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 42258261 - 42258293
Alignment:
| Q |
14 |
attatacttcatgatctgtgatgaaaattaaca |
46 |
Q |
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| T |
42258261 |
attatatttcatgatctgtgatgaaaattaaca |
42258293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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