View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_27 (Length: 348)
Name: NF14145_low_27
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 22045976 - 22045658
Alignment:
| Q |
18 |
aaaatataacacaaagctacaatcatatcaaccattatacccatagatttgtacttaagttgagaatattcatgatgttgtacgttgttgcatgttttgt |
117 |
Q |
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| T |
22045976 |
aaaatataacacaaagctactatcatatcaaccatcatactctt-gatttgtacttaagttgagaatattcatgatgttgtactttgttgcatgttttgt |
22045878 |
T |
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| Q |
118 |
ttcccaataagagataacaccagcacaaatacacgccacatgcaaattttgta-cttaagtga-----tattccttatcattgcattctttgatttccct |
211 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||| || || ||| | |||||||||||||||||||||||||||||||| |
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| T |
22045877 |
tttccaataagagataacaccagcacaaatacacgtcacatgcaaatttggtttctcaagcaaacaagtattccttatcattgcattctttgatttccct |
22045778 |
T |
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| Q |
212 |
tatataatcatgggaatcttttgaaagtttaattgtcccaatgttatcttacccaaaatcatgtcaatatatctcagtcatatcaatcaatactttgctt |
311 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22045777 |
tacataatcatgtgaatcttttgaaagtttaattgtcccaatgttatcttacccaaagtcatgtcaatatatctcagccatatcaatcaatactttgctt |
22045678 |
T |
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| Q |
312 |
ttgtctaatctatctataaagt |
333 |
Q |
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||| ||||||||||||||||| |
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| T |
22045677 |
ttg--taatctatctataaagt |
22045658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 31774611 - 31774528
Alignment:
| Q |
250 |
caatgttatcttacccaaaatcatgtcaatatatctcagtcatatcaatcaatactttgcttttgtctaatctatctataaagt |
333 |
Q |
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||||||||||||| ||||| ||||||||| || ||| | |||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
31774611 |
caatgttatcttatccaaagtcatgtcaagatctctaggccatatctatggatactttacttttgtctaatctatctataaagt |
31774528 |
T |
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