View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_30 (Length: 340)
Name: NF14145_low_30
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 41010544 - 41010226
Alignment:
| Q |
1 |
cgttgtctatgtgagtgagtatagtttagttgacagggacattgctttatatatataaggattagagttcgaattccggacgctctatttattcgtcata |
100 |
Q |
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| T |
41010544 |
cgttgtctatgtaagtgactatagtttagttgacagggacattgctttatatatgtaaggatcagagttcgaatttcgaacgctatatttattcgtcata |
41010445 |
T |
|
| Q |
101 |
taaaggtgaatttttaactaatagtctacttcacnnnnnnnntagttaacacgttcaaatatattgttaattatgttcttgtaatttctcaacacgatta |
200 |
Q |
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| T |
41010444 |
taaaggtgaatttttaactactagactacttca-aaaaaaaatagttaacacgctcgattatatggttaattatgttcttgtaattcctcaacacaatta |
41010346 |
T |
|
| Q |
201 |
atcacaatttaaatggttaatgtgattcaaa---gtatattgagacacttgaaaaatgtggttaattgtgtttgattgaatggttaatgagttaatgtgt |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010345 |
atcacaatttaaatggttaatgtgattcaaatatgtatattgagacacttgaaaaatgtggttaattgtgtttgattgaatggttaatgagttaatgtgt |
41010246 |
T |
|
| Q |
298 |
aatcttacgtatattcttgg |
317 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
41010245 |
aatcttacgtatatgcttgg |
41010226 |
T |
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