View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_low_32 (Length: 324)

Name: NF14145_low_32
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_low_32
NF14145_low_32
[»] chr5 (1 HSPs)
chr5 (25-320)||(15926225-15926520)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 15926225 - 15926520
Alignment:
Q  25 ggtagaaaatttatatctggttatggttatcctattaagggtggaaaaa-atcttatcttttcacatcgcggtaaaagaattcgatgtgaaatat-tttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15926225 ggtagaaaatttatatctggttatggttatcctattaagggtggaaaaatatcttatcttttcacatcgcggtaaaagaattcgatgtgaaatatgtttt 15926324  T
Q  123 tcacatcaagcgtttaccggatttgcaaagttaatccattattacacaagttaaaactatacaccgatgtgaaaacagtttttcacattgtgtgttcaac 222  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  15926325 tcacatcaagtgtttacgggatttgcaaagttaatccgttattacacaagttaaaacta--caccaatgtgaaaacagtttttcacattgagtgttcaac 15926422  T
Q  223 gatcgggcaaaataccaagatacatcacctatattcacatcggttaaagaattgatgtgaaatgtgcattaaatagatgtaaaaaatctattatgcac 320  Q
     |   |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15926423 aactaggcaaagtaccaagatacatcacctatgttcacatcggttaaagaattgatgtgaaatgtgcattaaatagatgtaaaaagtctattatgcac 15926520  T

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