View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_low_33 (Length: 319)

Name: NF14145_low_33
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_low_33
NF14145_low_33
[»] chr4 (3 HSPs)
chr4 (14-304)||(54396452-54396742)
chr4 (14-306)||(23587580-23587872)
chr4 (14-277)||(23596461-23596724)
[»] chr7 (8 HSPs)
chr7 (14-181)||(8017385-8017552)
chr7 (14-304)||(8102696-8102986)
chr7 (39-109)||(8581754-8581824)
chr7 (47-265)||(39985708-39985926)
chr7 (24-113)||(7877773-7877862)
chr7 (48-109)||(8570374-8570435)
chr7 (48-112)||(8609980-8610044)
chr7 (62-126)||(8628609-8628673)
[»] chr2 (5 HSPs)
chr2 (150-283)||(5445621-5445754)
chr2 (47-94)||(17648100-17648147)
chr2 (47-94)||(17666742-17666789)
chr2 (225-300)||(17716546-17716621)
chr2 (46-94)||(17705797-17705845)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 54396452 - 54396742
Alignment:
Q  14 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396452 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 54396551  T
Q  114 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396552 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 54396651  T
Q  214 ctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatcttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396652 ctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatcttt 54396742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 23587872 - 23587580
Alignment:
Q  14 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    ||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||    
T  23587872 aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct 23587773  T
Q  114 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 213  Q
    || || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | ||    
T  23587772 ttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtag 23587673  T
Q  214 ctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatcttttg 306  Q
    |||||||||| | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| ||||||||||    
T  23587672 ctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttg 23587580  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 23596724 - 23596461
Alignment:
Q  14 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    |||||| |||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||    
T  23596724 aatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct 23596625  T
Q  114 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 213  Q
    ||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | ||    
T  23596624 ttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtag 23596525  T
Q  214 ctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacatt 277  Q
    |||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| ||||||    
T  23596524 ctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacatt 23596461  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 8017552 - 8017385
Alignment:
Q  14 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    |||||||||||| || |||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||     
T  8017552 aatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagcc 8017453  T
Q  114 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaa 181  Q
    || ||||| || || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  8017452 ttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa 8017385  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 8102696 - 8102986
Alignment:
Q  14 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    |||||||||||| || |||||| |||||||   |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||     
T  8102696 aatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagcc 8102795  T
Q  114 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 213  Q
    || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | ||||||||  || ||    || |  |    
T  8102796 ttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgtcg 8102895  T
Q  214 ctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatcttt 304  Q
    | || || || | ||| || ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| |||||||||||||    
T  8102896 cctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatcttt 8102986  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 8581754 - 8581824
Alignment:
Q  39 aactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 109  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581754 aactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 39985708 - 39985926
Alignment:
Q  47 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 146  Q
    |||||| || |||||||||||||| |||||||| ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||||| ||     
T  39985708 aacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagc 39985807  T
Q  147 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 246  Q
    | ||| ||||| ||||| ||||| || | |||||| || |  || ||||  || ||    || |  |||||||| || | |||||||||||| |||||||    
T  39985808 aaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcag 39985907  T
Q  247 cagtaggctcattaataat 265  Q
    |||| |||||||| |||||    
T  39985908 cagtgggctcattgataat 39985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  24 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 113  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 8570374 - 8570435
Alignment:
Q  48 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 109  Q
    ||||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570374 acaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  48 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 112  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  62 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 126  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  150 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 249  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  250 taggctcattaataatcctcaacacattcaaacc 283  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  47 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 94  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  47 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 94  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 17716621 - 17716546
Alignment:
Q  225 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcat 300  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||    
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcat 17716546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 17705845 - 17705797
Alignment:
Q  46 aaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 94  Q
    ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705845 aaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

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