View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_low_35 (Length: 305)

Name: NF14145_low_35
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_low_35
NF14145_low_35
[»] chr7 (2 HSPs)
chr7 (118-293)||(32116669-32116846)
chr7 (21-58)||(32116572-32116609)
[»] chr1 (1 HSPs)
chr1 (129-174)||(32878678-32878723)
[»] chr5 (1 HSPs)
chr5 (123-166)||(39531501-39531544)
[»] scaffold0300 (1 HSPs)
scaffold0300 (134-175)||(10805-10846)
[»] chr2 (1 HSPs)
chr2 (130-167)||(17767658-17767695)
[»] chr4 (1 HSPs)
chr4 (129-161)||(12717223-12717255)
[»] chr3 (1 HSPs)
chr3 (130-174)||(4019582-4019626)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 118 - 293
Target Start/End: Original strand, 32116669 - 32116846
Alignment:
Q  118 aatatggaggtatgattttgggtcaaaattgactgtaaa-tcacccatctttgatagaccnnnnnnn-tggtgacggctaaagtttagaaaagagaaaag 215  Q
    ||||||||||||||||||||  |||||||||||| |||| | ||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  32116669 aatatggaggtatgattttgaatcaaaattgactataaaattacccatctttgatagaccagaaaaaatggtgacggctaaagtttagaaaagagaaaag 32116768  T
Q  216 agataaagtttatacaacaatcacacaatcgaaatgcattgatgtaaagttggtaatgagaactattttatggatttt 293  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  32116769 agataaagtttatacaacaatcacacaattgaaaagcagtgatgtaaagttggtaatgagaactattttatggatttt 32116846  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 32116572 - 32116609
Alignment:
Q  21 tcaaaacaaataatgtcgcgctgaaacgatgaaatcgc 58  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  32116572 tcaaaacaaataatatcgcgctgagacgatgaaatcgc 32116609  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 32878723 - 32878678
Alignment:
Q  129 atgattttgggtcaaaattgactgtaaatcacccatctttgataga 174  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||    
T  32878723 atgattttgggtcaaaattaaccctaaatcacccatctttgataga 32878678  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 39531501 - 39531544
Alignment:
Q  123 ggaggtatgattttgggtcaaaattgactgtaaatcacccatct 166  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||    
T  39531501 ggagggatgattttgggtcaaaattgaccttaaatcacccatct 39531544  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 10805 - 10846
Alignment:
Q  134 tttgggtcaaaattgactgtaaatcacccatctttgatagac 175  Q
    |||||||||||||||||  ||||||||| |||||||||||||    
T  10805 tttgggtcaaaattgaccataaatcaccaatctttgatagac 10846  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 17767658 - 17767695
Alignment:
Q  130 tgattttgggtcaaaattgactgtaaatcacccatctt 167  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  17767658 tgattctgggtcaaaattgactctaaatcacccatctt 17767695  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 12717223 - 12717255
Alignment:
Q  129 atgattttgggtcaaaattgactgtaaatcacc 161  Q
    ||||||||||||||||||||||| |||||||||    
T  12717223 atgattttgggtcaaaattgactctaaatcacc 12717255  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 4019626 - 4019582
Alignment:
Q  130 tgattttgggtcaaaattgactgtaaatcacccatctttgataga 174  Q
    |||||||| ||||||||||||  |||||||||| |||||||||||    
T  4019626 tgattttgagtcaaaattgaccctaaatcacccctctttgataga 4019582  T

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