View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_38 (Length: 290)
Name: NF14145_low_38
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 75 - 279
Target Start/End: Complemental strand, 42950697 - 42950493
Alignment:
| Q |
75 |
aaccattggcgaaaggcttcttctaagttataacaagcctgaaaccatgaacttgtnnnnnnngaaatggcagtcctaactcctaactagacagattcat |
174 |
Q |
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| T |
42950697 |
aaccattggcgaaaggcttcttctaagttataacaagtctgaaaccatgaacttgtaaaaaaagaaatgacagtcctaactcctaactaaacagattcat |
42950598 |
T |
|
| Q |
175 |
tcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatatttagctgaataaattactggctgtaataattatgatcat |
274 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950597 |
tcaataaatcaccaataacaaaaattaaacaagtttgacatattcaagaacaaaggcatatttagctgaataaattactggctgtaataattatgatcat |
42950498 |
T |
|
| Q |
275 |
gatga |
279 |
Q |
| |
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||||| |
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| T |
42950497 |
gatga |
42950493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42950811 - 42950730
Alignment:
| Q |
1 |
acacaaacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950811 |
acacaaacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
42950730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 2852231 - 2852094
Alignment:
| Q |
138 |
gaaatggcagtcctaactcctaactagacagattcattcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatattt |
237 |
Q |
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|||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
2852231 |
gaaaaggcagtcctaacttctagctagaccgattcattcaataaatcaccaacaacaaaaattaaacaagcttgacatattcaacaacaaaggcatattt |
2852132 |
T |
|
| Q |
238 |
agctgaataaattactggctgtaataattatgatcatg |
275 |
Q |
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| T |
2852131 |
agctgaataaattactggctgtaataattattatcatg |
2852094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 2904263 - 2904126
Alignment:
| Q |
138 |
gaaatggcagtcctaactcctaactagacagattcattcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatattt |
237 |
Q |
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|||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
2904263 |
gaaaaggcagtcctaacttctagctagaccgattcattcaataaatcaccaacaacaaaaattaaacaagcttgacatattcaacaacaaaggcatattt |
2904164 |
T |
|
| Q |
238 |
agctgaataaattactggctgtaataattatgatcatg |
275 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
2904163 |
agctgaataaattactggctgtaataattattatcatg |
2904126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2904440 - 2904359
Alignment:
| Q |
1 |
acacaaacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
82 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2904440 |
acacaatcgacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattg |
2904359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 2852400 - 2852327
Alignment:
| Q |
9 |
gacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
82 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2852400 |
gacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattg |
2852327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 2852305 - 2852249
Alignment:
| Q |
75 |
aaccattggcgaaaggcttcttctaagttataac-aagcctgaaaccatgaacttgt |
130 |
Q |
| |
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|||||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
2852305 |
aaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt |
2852249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 2904337 - 2904281
Alignment:
| Q |
75 |
aaccattggcgaaaggcttcttctaagttataac-aagcctgaaaccatgaacttgt |
130 |
Q |
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|||||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
2904337 |
aaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt |
2904281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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