View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_43 (Length: 264)
Name: NF14145_low_43
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 5500638 - 5500897
Alignment:
| Q |
1 |
cttcaatatctcggcatggattttgtcgacattaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgt |
100 |
Q |
| |
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||||||||||| |||||||||||| || |||| |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
5500638 |
cttcaatatcttggcatggattttatcaacatcaccaactcgtcccgtgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgt |
5500737 |
T |
|
| Q |
101 |
cctcttgcagtcttgcttctctccctccagcctcaccatttctaaatattacatctctctctacgctttatctctcaggaaatctttttaattccaccat |
200 |
Q |
| |
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||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || | |||||||||| | |||||||||||||||||||| || |
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| T |
5500738 |
ccttttgcagtcttgcttcactccctccagcttcaccatttctaaatattacatctctttccaggctttatctcactggaaatctttttaattccactat |
5500837 |
T |
|
| Q |
201 |
accttcttggctgttcaacatgagcagcctcacagtacttaacctacatgcttcatctct |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| | |||| ||| || ||||||||| |
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| T |
5500838 |
accttcttggctgttcaacatgagcggccttacagaaattaatctatatagttcatctct |
5500897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5484636 - 5484783
Alignment:
| Q |
1 |
cttcaatatctcggcatggattttgtcgacattaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
5484636 |
cttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgt |
5484735 |
T |
|
| Q |
101 |
cctcttgcagtcttgcttctctccctccagcctcaccatttctaaata |
148 |
Q |
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||||||||| |||||||||||| || || | ||||||||| |||||| |
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| T |
5484736 |
cctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
5484783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5489821 - 5490055
Alignment:
| Q |
1 |
cttcaatatctcggcatggattttgtcgacattaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgt |
100 |
Q |
| |
|
|||| |||||| | |||| ||||||| ||||||||||||| || ||||||||||| |||| ||||||||||||| ||| | | ||||| ||||||||| |
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|
| T |
5489821 |
cttcgatatcttgacatgaattttgtaaacattaccaactcgccacatgagttgttccaagttgtgaataagatgtcatatttgttagaattgcatttgg |
5489920 |
T |
|
| Q |
101 |
cctcttgcagtcttgcttctctccctccagcctcaccatttctaaatattacatctctctctacgctttatctctcaggaaatctttttaattccaccat |
200 |
Q |
| |
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| ||||||| ||||| ||||||||||| | ||||||||| ||||| |||||| || ||| |||| ||||||| ||||||| |||||||||| | || |
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| T |
5489921 |
cttcttgcaatcttggcgctctccctccatcgtcaccatttttaaattctacatcactttctgtgcttgatctctctggaaatcattttaattcctcaat |
5490020 |
T |
|
| Q |
201 |
accttcttggctgttcaacatgagcagcctcacag |
235 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| |
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|
| T |
5490021 |
accttcttggatgttcaacatgagcaccctcacag |
5490055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 5495633 - 5495823
Alignment:
| Q |
31 |
attaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgtcctcttgcagtcttgcttctctccctccag |
130 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || |||||||||| ||||||||||||||||||||||| | ||||| |||||||| |||||| ||| |
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| T |
5495633 |
attaccacctcgccccatgagtggtttcaaactatgaataagataccatctctattagagttgcatttaatgtattgcaatcttgcttttctcccaccat |
5495732 |
T |
|
| Q |
131 |
cctcaccatttctaaatattacatctctctctacgctttatctctcaggaaatctttttaattccaccataccttcttggctgttcaacat |
221 |
Q |
| |
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| ||||||||| ||||||||||||| || ||| |||| ||||||| ||||||| ||||||||| | |||||||||||| |||| ||||| |
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| T |
5495733 |
cttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcatctataccttcttggttgtttaacat |
5495823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 5467064 - 5467218
Alignment:
| Q |
1 |
cttcaatatctcggcatggattttgtcgacattaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgt |
100 |
Q |
| |
|
||||||||||| |||||| ||||| |||| || ||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
5467064 |
cttcaatatcttaacatggactttgttaacatcacagactcaccccgtgagttgtttcgagctgttaataagatgccatctctgttagagttgcatttgt |
5467163 |
T |
|
| Q |
101 |
cctcttgcagtcttgcttctctccctccagcctcaccatttctaaatattacatc |
155 |
Q |
| |
|
||| ||||| ||||||| | ||||||||| | ||||| ||| |||||||| |||| |
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|
| T |
5467164 |
ccttttgcaatcttgctgcactccctccatcttcaccctttttaaatatttcatc |
5467218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 5476749 - 5476922
Alignment:
| Q |
51 |
gttgtttcaagctgtgaataagatgccatctctattagagttgcatttgtcctcttgcagtcttgcttctctccctccagcctcaccatttctaaatatt |
150 |
Q |
| |
|
|||||||| ||||||||| |||||| | ||||| ||||||||||||||| | |||||| | || |||||||||||||| | || |||||| |||||||| |
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| T |
5476749 |
gttgtttcgagctgtgaaaaagatgtcttctctgttagagttgcatttggcttcttgcggaatttcttctctccctccaacttcgccatttttaaatatt |
5476848 |
T |
|
| Q |
151 |
acatctctctctacgctttatctctcaggaaatctttttaattccaccataccttcttggctgttcaacatgag |
224 |
Q |
| |
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||| | || ||| |||| ||||||| ||||||| ||| ||| || | || ||||||||||||||||||||||| |
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| T |
5476849 |
acaccactttctgtgcttgatctctctggaaatcctttaaatacctcaatgccttcttggctgttcaacatgag |
5476922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5481772 - 5481995
Alignment:
| Q |
1 |
cttcaatatctcggcatggattttgtcgacattaccaactcaccccatgagttgtttcaagctgtgaataagatgccatctctattagagttgcatttgt |
100 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||| |||||| ||||| |||||||||| | |||||||||||||| | ||| | ||||||||||| |||| |
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|
| T |
5481772 |
cttcaatatcttggcatggattttgccaaatttatcaactcgccccacgagttgtttcgatctgtgaataagatgtcttctatgttagagttgcacttgt |
5481871 |
T |
|
| Q |
101 |
cctcttgcagtcttgcttctctccctccagcctcaccatttctaaatattacatctctctctacgctttatctctcaggaaatctttttaattccaccat |
200 |
Q |
| |
|
||||||| ||| |||||||| || | ||||| ||| ||||||| ||||| || ||| ||| ||||||||||||||| |||| ||||| | || |
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|
| T |
5481872 |
cctcttg-----ttg---ctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaat |
5481963 |
T |
|
| Q |
201 |
accttcttggctgttcaacatgagcagcctca |
232 |
Q |
| |
|
|||||||||| | |||||||||||||| |||| |
|
|
| T |
5481964 |
accttcttggatattcaacatgagcagtctca |
5481995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 5485030 - 5485084
Alignment:
| Q |
170 |
atctctcaggaaatctttttaattccaccataccttcttggctgttcaacatgag |
224 |
Q |
| |
|
||||||| ||||||| |||||||||| | ||||||||||| ||||||||||||| |
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|
| T |
5485030 |
atctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgag |
5485084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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