View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_47 (Length: 242)
Name: NF14145_low_47
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45909594 - 45909814
Alignment:
| Q |
1 |
ctttgaataccagagtcatatagataacattaaaagcaaattgtatgatcagcaataagaataaaatagaaattaaactataggtcaatttgtgtaattg |
100 |
Q |
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| T |
45909594 |
ctttgaataccagagtcatatagataacattaaaagcaaattgtatgatcagcaataagaataaaatagaaa----actataggtcaatttgtgtaattg |
45909689 |
T |
|
| Q |
101 |
tttcaacaaacacttattgaaaaagataaaattgggataatcatatatagctgactgtcaaatttgtaaaaaactttaagcacaaatcaaaatgaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45909690 |
tttcaacaaacacttattgaaaaagataaaattgggataatcatatatagctgactgtgaaatttgtaaaaaactttaagcacagatcaaaatgaatttc |
45909789 |
T |
|
| Q |
201 |
ttaaatatttcataagctccctcct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45909790 |
ttaaatatttcataagctccctcct |
45909814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 21280906 - 21280794
Alignment:
| Q |
93 |
tgtaattgtttcaacaaacacttattgaaaaagataaaattgggataatca-----tatatagctgactgtcaaatttg-taaaaaactttaagcacaaa |
186 |
Q |
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|||||||||||||||||||| || |||||||| |||||||||||||||||| ||||| || ||||| ||||||| |||||||| ||||||| ||| |
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| T |
21280906 |
tgtaattgtttcaacaaacatttgttgaaaaacataaaattgggataatcaataatcatataactaactgtgaaatttgttaaaaaacattaagcaaaaa |
21280807 |
T |
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| Q |
187 |
tcaaaatgaattt |
199 |
Q |
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| T |
21280806 |
ttaaaatgaattt |
21280794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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