View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_49 (Length: 238)
Name: NF14145_low_49
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_49 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6752693 - 6752929
Alignment:
| Q |
1 |
gcaaaggatccaacatgtgtaataagcatgaaattaataatacaagtggtgtccacataaataatgatggttccaaggctagtgcaaatgttaactccat |
100 |
Q |
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| T |
6752693 |
gcaaaggatccaacatgtgtaataagcatgaaattaataatacaagtggtgtccacataaataaggatggttccaaggctagtgcaaatgtcaactccat |
6752792 |
T |
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| Q |
101 |
ggctatggaaacgacgtagactgaggtgcactacattcccatatttcactaaggtacttatgactagttttaatgatttatctattcttagttggaatta |
200 |
Q |
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| T |
6752793 |
ggctatggaaacgacgtagactgaggtgcactacattcctttatttcactaaggtacttatgactagttttaatgatttatctattcttagttggaa-ta |
6752891 |
T |
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| Q |
201 |
taaggggtgccgttgataaggagggtaagagacaaacc |
238 |
Q |
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| T |
6752892 |
taaggggtgccgttaataaggagggtaagagacgaacc |
6752929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 1811761 - 1811605
Alignment:
| Q |
81 |
agtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcactacattcccatatttcactaaggtacttatgactagttttaatgattta |
180 |
Q |
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| T |
1811761 |
agtgcaaatgttaattccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgattta |
1811662 |
T |
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| Q |
181 |
tctattcttagttggaattataaggggtgccgttgataaggagggtaagagacaaacc |
238 |
Q |
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| T |
1811661 |
tctattcttagttggaa-tataaggggtgccgttaataaggagggtaagagacaaacc |
1811605 |
T |
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