View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_5 (Length: 594)
Name: NF14145_low_5
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 6602232 - 6602783
Alignment:
| Q |
20 |
tctagtttctttctgtggaaattccagtgcaaactaggcaaatctcctttggcaattcagagtcgtaatagactccagttatccctgtcctttcgggcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602232 |
tctagtttctttctgtggaaattccagtgcaaactgggcaaatctcctttggcaattcagagtcgtaatagactccagttatccctgtcctttcgggcaa |
6602331 |
T |
|
| Q |
120 |
atctcctttggcatttaattttcagtggtgaaggtattcttcctttttaagaaactggctttgtatctgtgacaagcataggtatcaattagacacattt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602332 |
atctcctttggcatttaattttcagtggtgaaggtattcttcctttttaagaaactggctttgtatctgtgacaagcataggtatcaattagacacattt |
6602431 |
T |
|
| Q |
220 |
tgtattgtatacaaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctggtgtttaatgtttctattagcttggaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602432 |
tgtattgtatacaaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctggtgtttaatgtttctattagcttggaa |
6602531 |
T |
|
| Q |
320 |
aggtaaatatcttcttgaatccttatttatcgttaatattcctttacggatttgttgagattttgcttccgaacaatactataatttcctacttttattg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602532 |
aggtaaatatcttcttgaatccttatttatcgttaatattcctttacggatttgttgagattttgcttccgaacaatactataatttcctacttttattg |
6602631 |
T |
|
| Q |
420 |
tgtcttgaagttattttcttgtagcactgatgttaactatgacgcaaattatgacaggcatatagttgatggaagctcagatgactgattctgactggga |
519 |
Q |
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| T |
6602632 |
tgtcttgaagttattttcttgtagcactgatgttaactatgacgcaaattatgacaggcatatagttgatggaagctcagatgactgattctgactggga |
6602731 |
T |
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| Q |
520 |
gtcttccagtgagagtaccggcactgatgatcaagaggatattgattttctc |
571 |
Q |
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| T |
6602732 |
gtcttccagtgagagtagcggcactgatgatcaagaggatattgattttctc |
6602783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 3701320 - 3700763
Alignment:
| Q |
20 |
tctagtttctttctgtggaaattccagtgcaaactaggcaaatctcctttggcaattcagagtcgtaatagactccagttatccctgtcctttcgggcaa |
119 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| |
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| T |
3701320 |
tctagtttctttctgtgtaaattccagtgcaaactgggcaaatctcctttggcaattcggagtcataatagactccagttatccctgtcctgttgggcaa |
3701221 |
T |
|
| Q |
120 |
atctcctttggcatttaatttt-------cagtggtgaaggtattcttcctttttaagaaactggctttgtatctgtgacaagcataggtatcaattaga |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3701220 |
atctcctttggcatttaatttttcagtttcagtggtgaaggtattctttcttttcaagaaactggctttgtatctgtgacaagcataggtatcaatcaga |
3701121 |
T |
|
| Q |
213 |
cacattttgtattgtataca-aatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctggtgtttaatgtttctatta |
311 |
Q |
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||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3701120 |
cacattttgtattatatacagaatatcctctgaagttggtatcgactcatccgttgttgattgcaatacatacggactctggtgtttaatgtttctacta |
3701021 |
T |
|
| Q |
312 |
gcttggaaaggtaaatatcttcttgaatccttatttatcgttaatattcctttacggatttgttgagattttgcttccgaacaatactataatttcctac |
411 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
3701020 |
gcttggaaaggtaaggatcttcttgaatccttatttatttggaatattcctttaaggatttgttgagatttcacttcctaacaatactattatttcctac |
3700921 |
T |
|
| Q |
412 |
ttttattgtgtcttgaagttattttcttgtagcactgatgttaactatgacgcaaattatgacaggcatatagttgatggaagctcagatgactgattct |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700920 |
ttttattgtgtcttgaagttattttcttgtagcattgatgttaactgtga--caaattatgacaggcatatagttgatggaagctcagatgactgattca |
3700823 |
T |
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| Q |
512 |
gactgggagtcttccagtgagagtaccggcactgatgatcaagaggatattgattttctc |
571 |
Q |
| |
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||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||| |
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| T |
3700822 |
gactgggagtcttccagtgagagcagcggcagtgacgatcaagaggatattgattttctc |
3700763 |
T |
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