View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_6 (Length: 566)
Name: NF14145_low_6
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 48356741 - 48357025
Alignment:
| Q |
1 |
cactccaaaggtgaacttcaacattctcctctatctgtctacaatgtcagctccattaccaatagtcctcgaattcccactcatagtccaaagcaccagc |
100 |
Q |
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| T |
48356741 |
cactccaaaggtgaacttcaacattctcctctatctgtctacaatgtcagctccattaccaatagtcctcgaattcccactcatagtcctaagcaccagc |
48356840 |
T |
|
| Q |
101 |
accaccccaatctagaagccatcattgatcaagccaaaatcaatggatggtatatcaacccaaccgaggttagcactactcacatttccatcaatgtact |
200 |
Q |
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| T |
48356841 |
accaccccaatctagaagccatcattgatcaagccaaaatcaatggatggtatatcaacccaaccgaggttagcactactcacatttccatcaatgtact |
48356940 |
T |
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| Q |
201 |
----tatatatgtgctgtaaaatacaaataagtatcagaaaatttctcttttattatatttactaacaaagatttatttgacgac |
281 |
Q |
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| T |
48356941 |
tatatatatatgtgctgtaaaatacaaataagtatcagaaaatttctcttttattatatttactaacaaagatttatttgacgac |
48357025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 319 - 543
Target Start/End: Original strand, 48357027 - 48357251
Alignment:
| Q |
319 |
aatttgattcagtttaagaaataaacaagtacaaaactagagaaaaattaaagaagtatgccaatctaactagctagccatatatctatctatagtcaca |
418 |
Q |
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| T |
48357027 |
aatttgattcagtttaagaaataaacaagtacaaaactagagaaaaattaaagaagtatgccaatctaactagctagccatatatctatctatagtcaca |
48357126 |
T |
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| Q |
419 |
cacccaatattttaacatataataagtaaatacaaatcaacttgagcagattcaattggaagataaaatagggcagggaaccacagcagaaattcatagg |
518 |
Q |
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| T |
48357127 |
cacccaatattttaacatataataagtaaatacaaatcaacttgagcagattcaattggaagataaaatagggcagggaaccacagcagaaattcatagg |
48357226 |
T |
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| Q |
519 |
ggaacatggcgtggatttgaggtgg |
543 |
Q |
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| T |
48357227 |
ggaacatggcgtggatttgatgtgg |
48357251 |
T |
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