View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_low_8 (Length: 544)
Name: NF14145_low_8
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 108 - 537
Target Start/End: Complemental strand, 36946326 - 36945897
Alignment:
| Q |
108 |
gtgttaacaagtaaagagattactaacaaccttctctgatatttagtgctgctatcggtgaagtaaacgttcccttctgtatcaatgtctacatcattag |
207 |
Q |
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| T |
36946326 |
gtgttaacaagtaaagagattactaacaaccttctctgatatttagtgctgctatcggtgaagtaaacgttcccttctgtatcaatgtctacatcattag |
36946227 |
T |
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| Q |
208 |
taaatctaaatggtactccttctgcctcggttgcaagagatgttgcgaaaccaccttgaggccccaccttcataagcccgaaatatgcatctgctatgta |
307 |
Q |
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| T |
36946226 |
taaatctaaatggtactccttctgcttcggttgcaagagatgttgcgaaaccaccttgaggccccaccttcataagcccgaaatatgcatctgctatgta |
36946127 |
T |
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| Q |
308 |
taaatcaccagttttcttgtcaaatctgagtcccaaaggccttccgcagatgtcctcagtttcaacataactaagtggtgttgcagatgcctctagattg |
407 |
Q |
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| T |
36946126 |
taaatcaccagttttcttgtcaaatctgagtcccaaaggccttccacagatgtcctcagtttcaacataactaagtggtgttgcagatgcctttagattg |
36946027 |
T |
|
| Q |
408 |
catagttctgacctgtgttcagaaataaagctcgagaaatattatcacacgattgcaaagttacatagctacaagttatctatcgatcttaagaaaaatc |
507 |
Q |
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| T |
36946026 |
catagttctgacctgtgttcagaaataaagctcgagaaatattatcacacgattgcaaagttacatagctacaaattatctatcgatcttaagaaaaatc |
36945927 |
T |
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| Q |
508 |
ttccctatctattcatattaagaataatct |
537 |
Q |
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| T |
36945926 |
ttccttatctattcatcttaagaaaaatct |
36945897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 36946371 - 36946321
Alignment:
| Q |
18 |
agaatgacatcagaagtcagcaccaataaaaccagccaaacttttgtgtta |
68 |
Q |
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| T |
36946371 |
agaatgacatcagaagtcagcaccaataaaaccagccaaacttttgtgtta |
36946321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 225 - 388
Target Start/End: Original strand, 17768830 - 17768993
Alignment:
| Q |
225 |
ccttctgcctcggttgcaagagatgttgcgaaaccaccttgaggccccaccttcataagcccgaaatatgcatctgctatgtataaatcaccagttttct |
324 |
Q |
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||||| ||||| ||||||||||||||||| ||||| || | ||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||||| |
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| T |
17768830 |
ccttcagcctcagttgcaagagatgttgctaaacctccctcgggccccaccttcaacagcccaagatatgcatctgcaatgtacaattcacctgttttct |
17768929 |
T |
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| Q |
325 |
tgtcaaatctgagtcccaaaggccttccgcagatgtcctcagtttcaacataactaagtggtgt |
388 |
Q |
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|||| ||||||||||||||||||||||| || |||| |||||| | |||||||||| |||||| |
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| T |
17768930 |
tgtcgaatctgagtcccaaaggccttccacatatgtgctcagtcttcacataactaaatggtgt |
17768993 |
T |
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