View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14146_high_1 (Length: 744)
Name: NF14146_high_1
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 141 - 634
Target Start/End: Complemental strand, 23408821 - 23408328
Alignment:
| Q |
141 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
240 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23408821 |
tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc |
23408722 |
T |
|
| Q |
241 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23408721 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac |
23408622 |
T |
|
| Q |
341 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggt |
440 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23408621 |
ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggt |
23408522 |
T |
|
| Q |
441 |
ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgc |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23408521 |
ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgc |
23408422 |
T |
|
| Q |
541 |
ttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcct |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408421 |
ttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcct |
23408328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 145 - 419
Target Start/End: Complemental strand, 23415986 - 23415712
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23415986 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23415887 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415886 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
23415787 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23415786 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac |
23415712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 141 - 418
Target Start/End: Complemental strand, 23453653 - 23453376
Alignment:
| Q |
141 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
240 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23453653 |
tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23453554 |
T |
|
| Q |
241 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23453553 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc |
23453454 |
T |
|
| Q |
341 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
23453453 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga |
23453376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 23868733 - 23869006
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868733 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
23868832 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23868833 |
atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
23868932 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || ||||||| |
|
|
| T |
23868933 |
tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
23869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 24307224 - 24307497
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307224 |
gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
24307323 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24307324 |
atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
24307423 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
24307424 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga |
24307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 141 - 418
Target Start/End: Original strand, 23402071 - 23402348
Alignment:
| Q |
141 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
240 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23402071 |
tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23402170 |
T |
|
| Q |
241 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23402171 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc |
23402270 |
T |
|
| Q |
341 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23402271 |
ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga |
23402348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 23885828 - 23886101
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23885828 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23885927 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23885928 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt |
23886027 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23886028 |
tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga |
23886101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 26832736 - 26833009
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26832736 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26832835 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26832836 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26832935 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26832936 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26833009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 26434025 - 26434298
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26434025 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26434124 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26434125 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26434224 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26434225 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 145 - 418
Target Start/End: Original strand, 26435805 - 26436078
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26435805 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26435904 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26435905 |
atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26436004 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26436005 |
tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga |
26436078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 145 - 418
Target Start/End: Complemental strand, 34662318 - 34662045
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34662318 |
gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg |
34662219 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
34662218 |
atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt |
34662119 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
34662118 |
tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga |
34662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 23401931 - 23402031
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401931 |
gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
23402030 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
23402031 |
c |
23402031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
234 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
333 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
334 |
gtcagacttgttcttcctggtgaattggccaag |
366 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24307080 - 24307186
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307080 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
24307179 |
T |
|
| Q |
101 |
cagctgc |
107 |
Q |
| |
|
| ||||| |
|
|
| T |
24307180 |
ccgctgc |
24307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26832592 - 26832701
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
26832592 |
gagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggtt |
26832691 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
26832692 |
cagccgccgg |
26832701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23408961 - 23408861
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23408961 |
gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggtt |
23408862 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
23408861 |
c |
23408861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23416127 - 23416018
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23416127 |
gagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggtt |
23416028 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
23416027 |
cagctgccgg |
23416018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23868589 - 23868698
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
23868589 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggtt |
23868688 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23868689 |
cagccgccgg |
23868698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26433881 - 26433990
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
26433881 |
gagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggtt |
26433980 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
26433981 |
cagccgccgg |
26433990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26435661 - 26435770
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
26435661 |
gagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggtt |
26435760 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
26435761 |
cagccgccgg |
26435770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23885684 - 23885793
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
23885684 |
gagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggtt |
23885783 |
T |
|
| Q |
101 |
cagctgccgg |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23885784 |
cagccgccgg |
23885793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 34662462 - 34662359
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||| |
|
|
| T |
34662462 |
gagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggtt |
34662363 |
T |
|
| Q |
101 |
cagc |
104 |
Q |
| |
|
|||| |
|
|
| T |
34662362 |
cagc |
34662359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23453793 - 23453696
Alignment:
| Q |
1 |
gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg |
98 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
23453793 |
gagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg |
23453696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 669 - 726
Target Start/End: Complemental strand, 23408326 - 23408269
Alignment:
| Q |
669 |
tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttgg |
726 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23408326 |
tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttgg |
23408269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 145 - 395
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
41670401 |
gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg |
41670500 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || |||||||| || | ||||| |
|
|
| T |
41670501 |
atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt |
41670600 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
395 |
Q |
| |
|
||| || |||||| | || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
41670601 |
tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 142 - 415
Target Start/End: Original strand, 40795767 - 40796040
Alignment:
| Q |
142 |
gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
241 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||| |
|
|
| T |
40795767 |
gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca |
40795866 |
T |
|
| Q |
242 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
341 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||| || | || |
|
|
| T |
40795867 |
atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct |
40795966 |
T |
|
| Q |
342 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt |
415 |
Q |
| |
|
|||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| ||||||||||||| |
|
|
| T |
40795967 |
cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt |
40796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
| Q |
293 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
392 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
393 |
tgtgactaagtttac |
407 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttac |
33216708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 145 - 395
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
395 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
| Q |
340 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
418 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || ||||||||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga |
45576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
237 |
catcaatgatatcttcgagaagcttgctcaagaatca |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 293 - 416
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
293 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
393 |
tgtgactaagtttacaagctctta |
416 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 145 - 395
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
344 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
345 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
395 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
237 |
catcaatgatatcttcgagaagcttgctcaagaatca |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
328 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
380 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
145 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
244 |
Q |
| |
|
||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
245 |
atatcttcgagaagcttgctcaagaa |
270 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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