View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_10 (Length: 393)
Name: NF14146_high_10
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 72 - 378
Target Start/End: Complemental strand, 19937383 - 19937077
Alignment:
| Q |
72 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaacaac |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
19937383 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagctttccaacaac |
19937284 |
T |
|
| Q |
172 |
ctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaacaaca |
271 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
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| T |
19937283 |
ctatttctcggccagctgctacagaggaagctattccgactcagcactcaagtctgatccctacagagctaaccaacttgcaatctcagccacaacaaca |
19937184 |
T |
|
| Q |
272 |
actctctcggcctacttctgcagtagaaactctacctcttcaaaattcaagtcagcagcatgttccctcccaagaggaaaatttgtaaactttcaacact |
371 |
Q |
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|||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| | |||||||| ||| |
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| T |
19937183 |
gctctatcggcctacttctgcagcaaaaactctacctcttcaaaattcaagtcagcagcatgttccctccgaggtggaaaatttgcagactttcaagact |
19937084 |
T |
|
| Q |
372 |
tcccaac |
378 |
Q |
| |
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||||||| |
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| T |
19937083 |
tcccaac |
19937077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 19937459 - 19937419
Alignment:
| Q |
14 |
catagggcatcatgtttcagtttgtcggtggattcatccac |
54 |
Q |
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| T |
19937459 |
catagggcatcatatttcagtttgtcggtggattcatccac |
19937419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 73 - 378
Target Start/End: Original strand, 8478801 - 8479109
Alignment:
| Q |
73 |
ttgctcagggtaagaagcaaatgccaacacagaggact---gaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaaca |
169 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8478801 |
ttgctcaggggaagaagccaatgccaacacagaggactcatgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagccttccaaca |
8478900 |
T |
|
| Q |
170 |
acctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaacaa |
269 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| || |
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| T |
8478901 |
acctgtttctcggccagctgctaccaaggaagctattccgactcagaactcaagtccagtccctacagagctaaccaacttgcaatctcagccacaataa |
8479000 |
T |
|
| Q |
270 |
caactctctcggcctacttctgcagtagaaactctacctcttcaaaattcaagtcagcagcatgttccctcccaagaggaaaatttgtaaactttcaaca |
369 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||| |
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| T |
8479001 |
caactctctcggcctacttctgcagcagaaactctacctcttcaaaattcaaatcagcagcatgttccctccgaggaggaaaatttgtagactttcaaca |
8479100 |
T |
|
| Q |
370 |
cttcccaac |
378 |
Q |
| |
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||||||||| |
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|
| T |
8479101 |
cttcccaac |
8479109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8478724 - 8478764
Alignment:
| Q |
14 |
catagggcatcatgtttcagtttgtcggtggattcatccac |
54 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8478724 |
catagggcatcatatttcagtttgtcggtggattcatccac |
8478764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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