View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_13 (Length: 368)
Name: NF14146_high_13
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 190181 - 190525
Alignment:
| Q |
18 |
atgagttaagttgattgtgtccaggttcagagccacttggcaaaatagagacatataggaaacaacatttttgttattttgataaacattaccataatta |
117 |
Q |
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| T |
190181 |
atgagttaagttgattgtgtccaggttcagagccacttggcaaaatagagacatataggaaataacatttttgttattttgataaacattaccataatta |
190280 |
T |
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| Q |
118 |
gatatttaacatcagatcaactttttgtggtcttaggtaattaagtcaagtatgatgataaatttaactaaccttgttatgcaatctcatgacacgttga |
217 |
Q |
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| T |
190281 |
gatatttaacatcagatcaactttttgtggtcttaggtaattaagtcaagtatgatggtaaatttaactaaccttgttatgcaatctcatgacacgttga |
190380 |
T |
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| Q |
218 |
tctaatattctagctacatgcacacattatatataccaatatatcatggattagctgctagttcctgcaaattaaagtagaagattgatcatagaagcaa |
317 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
190381 |
tctaa---tctagctacatgcacacattatatataccaatatatcatggatta---gctagttcctgcaaattaaagtagaagattgatcatagaagcaa |
190474 |
T |
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| Q |
318 |
cctatgttgactggatttccctgtattgtttctaaaaagtgacaaataatt |
368 |
Q |
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| T |
190475 |
cctatgttgactagatttccctgtattgtttctaaaaagtgacaaataatt |
190525 |
T |
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