View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14146_high_14 (Length: 347)

Name: NF14146_high_14
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14146_high_14
NF14146_high_14
[»] chr4 (2 HSPs)
chr4 (17-340)||(38589990-38590313)
chr4 (296-339)||(16080262-16080305)
[»] chr8 (3 HSPs)
chr8 (211-339)||(22638941-22639067)
chr8 (17-207)||(22642157-22642347)
chr8 (255-339)||(63903-63987)
[»] chr1 (2 HSPs)
chr1 (17-199)||(19793762-19793943)
chr1 (230-340)||(44886030-44886140)
[»] chr6 (2 HSPs)
chr6 (246-340)||(19329035-19329128)
chr6 (255-307)||(20646971-20647023)
[»] chr3 (2 HSPs)
chr3 (246-339)||(48772365-48772457)
chr3 (255-307)||(110843-110895)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 38589990 - 38590313
Alignment:
Q  17 attatttgctgaacaagtagcatttccaatcttcttgccattcgcgtactgtcaatcctccaacaagtgattcgaacgctctaaaatattgctgcttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38589990 attatttgctgaacaagtagcatttccaatcttcttgccattcgcgtactgtcaatcctccaacaagtgattcgaacgctctaaaatattgctgcttgtt 38590089  T
Q  117 tctgctatctgctgccaaattctgagattcctacttttccacatactccagattatagtagctatgcatgctacctgattgttgttagcttgcttcatgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38590090 tctgctatctgctgccaaattctgagattcctacttttccacatactccagattatagtagctatgcatgcaacctgattgttgttagcttgcttcatgt 38590189  T
Q  217 gctgcaacttttgcatactttttaggtcgaaacccctccctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgatttagtaatacga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  38590190 gctgcaacttttgcatactttttaggtcgaaacccctccctttgaacaaagaatctcctgaccaattatcaatccatctgttcttgatttagtaatacga 38590289  T
Q  317 cccaagcgaaagctaaaacctttg 340  Q
    ||||||||||||||||||||||||    
T  38590290 cccaagcgaaagctaaaacctttg 38590313  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 16080305 - 16080262
Alignment:
Q  296 gttcttgatttagtaatacgacccaagcgaaagctaaaaccttt 339  Q
    |||||||||||||||| ||||||||  |||||||||||||||||    
T  16080305 gttcttgatttagtaacacgacccatacgaaagctaaaaccttt 16080262  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 22639067 - 22638941
Alignment:
Q  211 tcatgtgctgcaacttttgcatactttttaggtcgaaacccctccctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgatttagta 310  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  22639067 tcatgtgctgcaacttttacatactttttaggttgaaacccctcc-tttgaacaaagaatctcctgaccaattatcaatccatttgttcttgatttaata 22638969  T
Q  311 atacgacccaagcgaaagctaaaaccttt 339  Q
    ||||| |||||||||||||||||||||||    
T  22638968 atacg-cccaagcgaaagctaaaaccttt 22638941  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 22642347 - 22642157
Alignment:
Q  17 attatttgctgaacaagtagcatttccaatcttcttgccattcgcgtactgtcaatcctccaacaagtgattcgaacgctctaaaatattgctgcttgtt 116  Q
    |||||||||||||| |||||||| ||||| |||| |||||||| | ||||| |||||||||||||||||||||| || ||| |||||  ||||| |||||    
T  22642347 attatttgctgaaccagtagcatgtccaagcttcctgccattcacatactgccaatcctccaacaagtgattcgcacactccaaaatgctgctgtttgtt 22642248  T
Q  117 tctgctatctgctgccaaattctgagattcctacttttccacatactccagattatagtagctatgcatgctacctgattgttgttagctt 207  Q
    |||||||||| ||||||| |||||||||||||||||||| |||| |||| ||||||||||| ||||  |||| |||||| ||| |||||||    
T  22642247 tctgctatctactgccaatttctgagattcctacttttctacatgctcctgattatagtagttatgggtgctgcctgatcgttattagctt 22642157  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 63987 - 63903
Alignment:
Q  255 cctttgaacaaagaatctcctgaccaattatcaat-ccagttgttcttgatttagtaatacgacccaagcgaaagctaaaaccttt 339  Q
    |||||||||||||||| || |||||||| | |||| ||| | ||||||||||||||||  ||||||| |||||| |||||||||||    
T  63987 cctttgaacaaagaatttcttgaccaatca-caataccattcgttcttgatttagtaacccgacccatgcgaaaactaaaaccttt 63903  T

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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 19793943 - 19793762
Alignment:
Q  17 attatttgctgaacaagtagcatttccaatcttcttgccattcgcgtactgtcaatcctccaacaagtgattcgaacgctctaaaatattgctgcttgtt 116  Q
    |||||||||||||| ||||| || ||||| |||| |||||||||| ||||| |||||||||||||||||||||| || ||| |||||  ||||| |||||    
T  19793943 attatttgctgaaccagtag-atgtccaagcttcctgccattcgcatactgccaatcctccaacaagtgattcgcacactccaaaatgctgctgtttgtt 19793845  T
Q  117 tctgctatctgctgccaaattctgagattcctacttttccacatactccagattatagtagctatgcatgctacctgattgtt 199  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||| |||| ||||||||||| |||||||||| ||||||||||    
T  19793844 tctgttatctactgccaatttctgagattcctacttttctacatgctcctgattatagtagttatgcatgctgcctgattgtt 19793762  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 44886030 - 44886140
Alignment:
Q  230 catactttttagg-tcgaaacccctccctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgatttagtaatacgacccaagcgaaag 328  Q
    |||||||||| || ||||||||||||| |||||||||||||| || |||||||||||||  ||  |||||||||| ||||||| ||| |||| ||| ||     
T  44886030 catactttttgggctcgaaacccctcc-tttgaacaaagaatttcttgaccaattatcataccgtttgttcttgacttagtaacacggcccatgcggaaa 44886128  T
Q  329 ctaaaacctttg 340  Q
    ||||||||||||    
T  44886129 ctaaaacctttg 44886140  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 19329128 - 19329035
Alignment:
Q  246 aaacccctccctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgatttagtaatacgacccaagcgaaagctaaaacctttg 340  Q
    |||||||||| ||||||||||||||||| |||||||||| ||  ||| | |||||||||||||||| || |||||  || || ||||||||||||    
T  19329128 aaacccctcc-tttgaacaaagaatctcttgaccaattaccataccattcgttcttgatttagtaacacaacccatacggaaactaaaacctttg 19329035  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 20646971 - 20647023
Alignment:
Q  255 cctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgattta 307  Q
    |||||||||||| |||||| |||||||||||||  ||| ||||||||||||||    
T  20646971 cctttgaacaaacaatctcttgaccaattatcataccatttgttcttgattta 20647023  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 48772457 - 48772365
Alignment:
Q  246 aaacccctccctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgatttagtaatacgacccaagcgaaagctaaaaccttt 339  Q
    |||||||||| ||| ||||||||||||| |||||||||| |   |||   |||||||||||||||| ||||||||  |||||||||||||||||    
T  48772457 aaacccctcc-tttaaacaaagaatctcttgaccaattaccctaccatccgttcttgatttagtaacacgacccatacgaaagctaaaaccttt 48772365  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 110895 - 110843
Alignment:
Q  255 cctttgaacaaagaatctcctgaccaattatcaatccagttgttcttgattta 307  Q
    |||||||||||| |||||| |||||||||| ||  ||| ||||||||||||||    
T  110895 cctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta 110843  T

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