View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14146_high_18 (Length: 276)
Name: NF14146_high_18
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 53 - 267
Target Start/End: Original strand, 35581553 - 35581771
Alignment:
| Q |
53 |
aaatgtatttttactaaaagcac-atgtttttgtcaaatgtggagactataaacaaataaaaatttatagggactaaactcagaaaatcaatattttata |
151 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35581553 |
aaatgtatttttactaaaagcaccatgtttttatcaaatgtggagactataaacaaataaaaatttatagggactaaactcagaaaatcaatattttata |
35581652 |
T |
|
| Q |
152 |
aagactaaacatatttaactcatgttttctta---aggtctaacatgtaagttactgtcaggggtgtgcataataaaatgttttcaaaattaaaatcata |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
35581653 |
aagactaaacatatttaactcatgttttcttaattaggtctaacatgtaagttactgtcaggggtatgcataatgtaatgttttcaaaattaaaatcata |
35581752 |
T |
|
| Q |
249 |
cccataaggaatatctctg |
267 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35581753 |
cccataaggaatatctctg |
35581771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 35581489 - 35581526
Alignment:
| Q |
18 |
ataaaatcacagatcttttaagtttagttctttaaaaa |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35581489 |
ataaaatcacagatcttttaagtttagttctttaaaaa |
35581526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 35567007 - 35567043
Alignment:
| Q |
231 |
ttcaaaattaaaatcatacccataaggaatatctctg |
267 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35567007 |
ttcaaaattaaaaccatacccataaggaatatctctg |
35567043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University