View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_2 (Length: 638)
Name: NF14146_high_2
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Complemental strand, 39084683 - 39084073
Alignment:
| Q |
10 |
attatacttgctcaaaacagtggcagagttggtttctcaagttagaatcagaatgaaaaacaaaacatcactatgtccaccctttctaggagggttctga |
109 |
Q |
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| T |
39084683 |
attatacttgctcaaaacagtggcagagttggtttctcaagttagaatcagaatgaaaaacaaaacatcactatgtccaccctttctaggaggctcctga |
39084584 |
T |
|
| Q |
110 |
taggcctcattaacaaacaaaaagatccaagcgagcataaatcagaagaccaaaatttaagtgtctatcatcttgattttcaagcagtggcaaggaaaga |
209 |
Q |
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| T |
39084583 |
taggcctcattaacaaacaaaaagatccaagcgagcataaatcagaagaccaaaatttaagtgtctatcatcttgattttcaagcagtggcaaggaaaga |
39084484 |
T |
|
| Q |
210 |
atcatgacaacaatctcttgagaaatacttagtttaacatnnnnnnncaggcttttggtcaaatgttttgggagctcacgcatcacctgttatattaact |
309 |
Q |
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| T |
39084483 |
atcatgacaacaatctcttgagaaatacttagtttaacataaaaaaacagacttttggtcaaatgttttgggagctcacgcatcacctgttatattaact |
39084384 |
T |
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| Q |
310 |
ctaaaactacccttatagtctttctcttaaataataatcacgaacttcaaaatcatgacggagaacctaataagagaacaatggatgttgtgaactacta |
409 |
Q |
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| T |
39084383 |
ctaaaactacccttatagtctttctcttaaataataatcacgaacttcaaaatcatgacggagaaactaataagagaacaatggatgttgtgaactacta |
39084284 |
T |
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| Q |
410 |
agtcaacagttacgaaaactcgatgaaaagttttccccccttaaacatactgatnnnnnnnttagcaagaaataagaagactgaagagtatggcaatgaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39084283 |
agtcaacagttacgaaaactcgatgaaaagttttccccccttaaacatactgataaaaaaattagcaagaaataagaagactgaagagtatggcaatgaa |
39084184 |
T |
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| Q |
510 |
taacattaaaattaactacaacaaatatggctgatgcaactcaaacaaaattgagttggggtcacatatacatcaaatcaaagaccatgtcctcacgatt |
609 |
Q |
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| T |
39084183 |
taacattaaaattaactacaacaaatatggctgatgcaactcaaacacaattgagttggggtcacatatacatcaaatcaaagaccatgtcctcacgatt |
39084084 |
T |
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| Q |
610 |
ggggccacaat |
620 |
Q |
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| T |
39084083 |
ggggccacaat |
39084073 |
T |
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