View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_25 (Length: 252)
Name: NF14146_high_25
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 29784099 - 29783862
Alignment:
| Q |
14 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggggccat |
113 |
Q |
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| T |
29784099 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggggccat |
29784001 |
T |
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| Q |
114 |
taacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaatatttag |
213 |
Q |
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| T |
29784000 |
ttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaatatttag |
29783901 |
T |
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| Q |
214 |
aattccgcaaactttgaaagcattgttttcggtatttct |
252 |
Q |
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| T |
29783900 |
aattcggcaaactttgaaagcattgttttcggtatttct |
29783862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 29788106 - 29787869
Alignment:
| Q |
14 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggggccat |
113 |
Q |
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| T |
29788106 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggggccat |
29788008 |
T |
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| Q |
114 |
taacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaatatttag |
213 |
Q |
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| T |
29788007 |
ttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaatatttag |
29787908 |
T |
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| Q |
214 |
aattccgcaaactttgaaagcattgttttcggtatttct |
252 |
Q |
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| T |
29787907 |
aattcggcaaactttgaaagcattgttttcggtatttct |
29787869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 42636127 - 42636159
Alignment:
| Q |
179 |
ttgaaaatgcatttgaaaatagattgaatattt |
211 |
Q |
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| T |
42636127 |
ttgaaaatgcatttcaaaatagattgaatattt |
42636159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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