View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14146_high_32 (Length: 220)

Name: NF14146_high_32
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14146_high_32
NF14146_high_32
[»] chr4 (11 HSPs)
chr4 (8-210)||(7615216-7615418)
chr4 (89-210)||(7628668-7628789)
chr4 (6-208)||(7637028-7637233)
chr4 (6-210)||(7606200-7606404)
chr4 (7-89)||(7656209-7656291)
chr4 (142-208)||(7633490-7633556)
chr4 (15-85)||(39070932-39071002)
chr4 (21-82)||(39087996-39088057)
chr4 (30-82)||(39097682-39097734)
chr4 (23-82)||(39091389-39091448)
chr4 (15-72)||(39082336-39082393)
[»] chr7 (5 HSPs)
chr7 (8-210)||(8936052-8936245)
chr7 (6-208)||(8913546-8913744)
chr7 (6-160)||(8941738-8941891)
chr7 (156-210)||(8938828-8938882)
chr7 (142-208)||(8919071-8919137)
[»] chr3 (2 HSPs)
chr3 (6-86)||(40147440-40147520)
chr3 (8-86)||(8102421-8102499)
[»] scaffold0190 (1 HSPs)
scaffold0190 (15-81)||(4435-4501)
[»] chr8 (1 HSPs)
chr8 (21-82)||(15745020-15745081)
[»] chr6 (1 HSPs)
chr6 (6-83)||(6500463-6500540)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 7615216 - 7615418
Alignment:
Q  8 tttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttg 107  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||     
T  7615216 tttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattatttttt 7615315  T
Q  108 gctatgtt-ggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatc 206  Q
    || ||||| || || ||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  7615316 gccatgttaggata-cctagcaaagcttggatttcttaaccaagactcgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatc 7615414  T
Q  207 tcac 210  Q
    ||||    
T  7615415 tcac 7615418  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 7628668 - 7628789
Alignment:
Q  89 gactaagaaattgtttttggctatgttggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaa 188  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628668 gactaagaaattgtttttggctatgttggttatcctaaggaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaa 7628767  T
Q  189 gcaattaacttgttcatctcac 210  Q
    ||||||||||||||||||||||    
T  7628768 gcaattaacttgttcatctcac 7628789  T

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Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 7637028 - 7637233
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttt 105  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  || |||||| ||||    
T  7637028 attttatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattatttt 7637127  T
Q  106 tggctatgttggtt---atcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgtt 202  Q
    |  | |||||  |    | ||||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  7637128 ttaccatgttcttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcatcagtgtgtgaagcaattaacttgtt 7637227  T
Q  203 catctc 208  Q
    ||||||    
T  7637228 catctc 7637233  T

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Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 7606200 - 7606404
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttt 105  Q
    |||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||| || |    
T  7606200 attttatatccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattat 7606299  T
Q  106 tggctatgttggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcat 205  Q
    |||  ||| | |  | ||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  7606300 tggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaattaatttgttcat 7606399  T
Q  206 ctcac 210  Q
    |||||    
T  7606400 ctcac 7606404  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 7656291 - 7656209
Alignment:
Q  7 ttttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatg 89  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  7656291 ttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaactttggagaactgctaatg 7656209  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 7633490 - 7633556
Alignment:
Q  142 ttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatctc 208  Q
    ||||||||||||| |||||||| |||| | |||||| ||||||||||||||||||||||||||||||    
T  7633490 ttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaacttgttcatctc 7633556  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 39070932 - 39071002
Alignment:
Q  15 ccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgct 85  Q
    ||||| ||||||||||| ||||||||||| || |||||||| ||| ||||||||||||  |||||||||||    
T  39070932 ccacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 39087996 - 39088057
Alignment:
Q  21 cgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 82  Q
    |||||| | |||||||| ||||| || ||||||||| ||||||||||||||| |||||||||    
T  39087996 cgaacccctacaggcttcccccaaccaaaatcattatcataaacatcaaaccttggagaact 39088057  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 39097682 - 39097734
Alignment:
Q  30 acaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 82  Q
    |||||||| ||||| || || |||||||||||||||||||||| |||||||||    
T  39097682 acaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaact 39097734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 39091389 - 39091448
Alignment:
Q  23 aaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 82  Q
    |||| |||||||||| ||||| || ||||||||||| |||||||||||||  ||||||||    
T  39091389 aacccccacaggcttcccccaaccaaaatcattaccgtaaacatcaaacctcggagaact 39091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 39082336 - 39082393
Alignment:
Q  15 ccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaacc 72  Q
    ||||| |||||| | || ||||| ||||| || |||||||||||||||||||||||||    
T  39082336 ccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

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Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 8936245 - 8936052
Alignment:
Q  8 tttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttg 107  Q
    ||||||||||| |||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||     
T  8936245 tttatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattctttttt 8936146  T
Q  108 gctatgttggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatct 207  Q
    |  |||||  |         ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  8936145 ggcatgttact---------aaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaattaacttgttcatct 8936055  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 8913744 - 8913546
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttt 105  Q
    |||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||| |||||||||| ||||||  || ||||||  |||    
T  8913744 attttatatccactacgaactgccacaggctttccccatc-------attaccataaacatcaaactatggagaactactaatggatatgaaattagttt 8913652  T
Q  106 tggctatgttggtt---atcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgtt 202  Q
    |  | |||||  |    | ||||| ||||||||||||| |||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||    
T  8913651 ttaccatgttcttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcgtcagcgtgtgaagcaattaacttgtt 8913552  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 8941891 - 8941738
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttt 105  Q
    |||||||||||||||||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || |    
T  8941891 attttatatccactacga-ctgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggataagaaattattat 8941793  T
Q  106 tggctatgttggttatcctaagaaagcttggattttttaaccaagactcgtagtg 160  Q
    |||  ||| | |  | ||||| ||||||||||||| ||||||||||||| |||||    
T  8941792 tggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtg 8941738  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 8938882 - 8938828
Alignment:
Q  156 tagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatctcac 210  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  8938882 tagtgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac 8938828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 8919137 - 8919071
Alignment:
Q  142 ttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatctc 208  Q
    ||||||||||||| |||||||| |||| | |||||| |||||||||||||||||| |||||||||||    
T  8919137 ttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaatttgttcatctc 8919071  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 40147520 - 40147440
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgcta 86  Q
    ||||||| |||||| ||||| |||||||| | ||||||||| |||||||||||||||||||||||||| || ||| |||||    
T  40147520 attttatttccactgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgcta 40147440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 8102421 - 8102499
Alignment:
Q  8 tttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgcta 86  Q
    ||||| |||||| ||||| ||||| || ||||||||||| |||| ||| |||||||||||||||||  | |||||||||    
T  8102421 tttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgcta 8102499  T

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Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 4435 - 4501
Alignment:
Q  15 ccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaac 81  Q
    ||||| |||||| ||||||| |||||||| || |||||||||||||||||||||||||| |||||||    
T  4435 ccacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac 4501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 15745081 - 15745020
Alignment:
Q  21 cgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 82  Q
    |||||| ||||||| |||||||| || |||||||| ||||||||||||||||| || |||||    
T  15745081 cgaacccccacaggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaact 15745020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 6500463 - 6500540
Alignment:
Q  6 attttatatccactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactg 83  Q
    ||||||| | |||| ||||  ||||| || || |||||||| |||||||||||||||| ||||||||| || ||||||    
T  6500463 attttatttacactgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 6500540  T

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