View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_4 (Length: 536)
Name: NF14146_high_4
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 192418 - 192927
Alignment:
| Q |
13 |
aatatatatggtacatagctagcttgtccaacaattccattcaaagagaaccttaattatctaatatacgtagctctgcttnnnnnnnnnnnntatatag |
112 |
Q |
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| T |
192418 |
aatatatatggtacatagctagcttgtccaacaattccattcaaagagaaccttaattatctaatatacatagctctgcttaaaaaacaaaaatatatag |
192517 |
T |
|
| Q |
113 |
cattattatgaaacataatggattaacaattgtcacttctttttaatcaatcaacattgcctttcacatatcaaaagaaaaactagaaaagcatacataa |
212 |
Q |
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| T |
192518 |
cattattatgaaacataatggattaacaattgtcacttctttttaatcaatcaacattgcctttcacatatcaaaagaaaaactagaaaagcatacataa |
192617 |
T |
|
| Q |
213 |
ataagaattaattaatatcatctacaaacttgagcatgatgagtgggagtaacatcacaattctctccaccaaatccaaactcatgcaagtttaaggctt |
312 |
Q |
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| T |
192618 |
ataagaattaattaatatcatctacaaacttgagcatgatgagtgggagtaacatcacaattctctccaccaaatccaaactcatgcaagtttaaggctt |
192717 |
T |
|
| Q |
313 |
cttttttatcttccacaaccttcaatattttctcaaacattgatacttgacatggaattttgagcacaccctcttgttggaaaccaaactcctcttcagc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
192718 |
cttttttatcttccacaaccttcaatattttctcaaacattgatacttgacatggaattttgagcacaccctcttgttggaaaccaaactcctcttcagc |
192817 |
T |
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| Q |
413 |
ttcttgtagcaacacctcaaatgcttgatgtttaaggtaatccattggaataatgaatctcttgagctctttcccaacacaaacagctagaaaacctttt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
192818 |
ttcttgtagcaacacctcaaatgcttgatgtttaaggtaatccattggaataatgaatctcttgagctctttcccaacacaaacagctagaaaacctttt |
192917 |
T |
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| Q |
513 |
ggaactatgt |
522 |
Q |
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|||||||||| |
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| T |
192918 |
ggaactatgt |
192927 |
T |
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