View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_high_7 (Length: 436)
Name: NF14146_high_7
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 2354850 - 2354443
Alignment:
| Q |
11 |
cacagatctttctactgacaaggcagagatgatttcaaggtttctcagagacccaaagtcttacttacgtcccaagatcaactgatcacaaaataacaaa |
110 |
Q |
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| T |
2354850 |
cacagatctttctactgacaaggcagagatgatttcaaggtttctcagagacccaaagtcttacttacgtcccaagatcaactgatcacaaaataacaaa |
2354751 |
T |
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| Q |
111 |
ggaatcaagattcaagtgatggggatagatgttaattccttcttcttttatcgttattaacttttgtataaaatagtatttttagtttcaattttatcaa |
210 |
Q |
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| T |
2354750 |
ggaatcaagattcaagtgatggggatagatgttaattccttcttcttttatcgttattaacttttgtataaaatagtatttttagtttcaattttatcaa |
2354651 |
T |
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| Q |
211 |
ttgataaaatagtattcttagttgcagttttatcaattgttaacttctatataagatagtattctatacaagacactgaaatcactctttctggaaaacc |
310 |
Q |
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| T |
2354650 |
ttgataaaatagtattcttagttgcagttttatcaattgttaacttctatataagatagtattctatacaagacactgaaattactctttctggaaaacc |
2354551 |
T |
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| Q |
311 |
aaagaatgtctgctcagaatctgattgctccaactagagcccctctcagatctaattactattttccatgggactttgaagcaggggatggtacattcta |
410 |
Q |
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| T |
2354550 |
aaagaatgtctgctcagaatctgattgctccaactagagcccctctcagacctaattactattttccatgggactttgaagcaggggatggtacattcta |
2354451 |
T |
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| Q |
411 |
tgcgatgg |
418 |
Q |
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| T |
2354450 |
tgcgatgg |
2354443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 2353218 - 2353138
Alignment:
| Q |
278 |
acaagacactgaaatcactctttctggaaaaccaaagaatgtctgctcagaatctgattgctccaactagagcccctctcaga |
360 |
Q |
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| T |
2353218 |
acaagacactgaaataactctttctggcaa--caaagaatgtctcctcagaatctgattgctacaactagagcccttctcaga |
2353138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 2353068 - 2353011
Alignment:
| Q |
156 |
ttttatcgttattaacttttgtataaaatagtatttttagtttcaattttatcaattg |
213 |
Q |
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| T |
2353068 |
ttttattgttgttaacttctgaataaaatggtatttttagtttcaattttatcaattg |
2353011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 2353046 - 2352986
Alignment:
| Q |
214 |
ataaaatagtattcttagttgcagttttatcaattgttaacttctatataagatagtattc |
274 |
Q |
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| T |
2353046 |
ataaaatggtatttttagtttcaattttatcaattgttaacttcggtataagatagtattc |
2352986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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