View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_16 (Length: 315)
Name: NF14146_low_16
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 10935727 - 10935566
Alignment:
| Q |
141 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtcttttatacgaatcagaacctttccagcttcttctcgtgct |
240 |
Q |
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| T |
10935727 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtctttcatacgaatcagaacctttccagcttcttctcgtgct |
10935628 |
T |
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| Q |
241 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttc |
302 |
Q |
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| T |
10935627 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttc |
10935566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 85 - 302
Target Start/End: Complemental strand, 10960320 - 10960103
Alignment:
| Q |
85 |
gttgcaaccataatatgttacatgatccgatctttactttgttaatgtttcggctataacacattggccaaatgaatgactatagtatttgtatcttttc |
184 |
Q |
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| T |
10960320 |
gttgcaaccataatatgttgcatgttccaaactttactttgttaacggttgggtttaaacacattggccaaatgaatgactatagtatagatatcttttc |
10960221 |
T |
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| Q |
185 |
aacaacattacctgtcttttatacgaatcagaacctttccagcttcttctcgtgctttattcaccaccaattctctagcgtattctctcaagtcttgttg |
284 |
Q |
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| T |
10960220 |
aacaacattacctatctttcatgcgaatcagaacctttccagcttcttctcgcgctttattttccaccaattttctagcgtagtctcttaagctttgttg |
10960121 |
T |
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| Q |
285 |
cattttttcaacagtttc |
302 |
Q |
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| T |
10960120 |
cattttttcaacagtttc |
10960103 |
T |
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