View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14146_low_17 (Length: 289)

Name: NF14146_low_17
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14146_low_17
NF14146_low_17
[»] chr6 (25 HSPs)
chr6 (1-289)||(27590930-27591218)
chr6 (1-289)||(27675527-27675815)
chr6 (9-289)||(27704172-27704452)
chr6 (37-287)||(26648409-26648659)
chr6 (37-287)||(26754377-26754627)
chr6 (37-282)||(26625205-26625447)
chr6 (37-282)||(26731182-26731424)
chr6 (37-289)||(28794333-28794586)
chr6 (37-289)||(28788212-28788465)
chr6 (38-287)||(26804443-26804692)
chr6 (176-289)||(27716594-27716707)
chr6 (147-289)||(31286527-31286669)
chr6 (176-276)||(27680949-27681049)
chr6 (176-289)||(27609215-27609328)
chr6 (176-289)||(27696684-27696797)
chr6 (176-289)||(26886044-26886157)
chr6 (1-118)||(27696538-27696658)
chr6 (147-215)||(26825864-26825932)
chr6 (146-218)||(27602770-27602842)
chr6 (12-96)||(27716458-27716541)
chr6 (167-282)||(26657953-26658068)
chr6 (167-282)||(26763924-26764039)
chr6 (227-282)||(27663347-27663402)
chr6 (147-289)||(26863568-26863710)
chr6 (43-110)||(27425585-27425654)
[»] scaffold0277 (2 HSPs)
scaffold0277 (37-289)||(11637-11891)
scaffold0277 (37-288)||(2674-2927)
[»] scaffold0419 (1 HSPs)
scaffold0419 (37-288)||(9459-9712)
[»] scaffold1870 (1 HSPs)
scaffold1870 (37-288)||(740-993)
[»] chr4 (7 HSPs)
chr4 (45-282)||(18677587-18677824)
chr4 (45-282)||(18653505-18653742)
chr4 (45-282)||(18729523-18729760)
chr4 (45-282)||(18722101-18722338)
chr4 (147-282)||(18697531-18697666)
chr4 (147-280)||(18687743-18687876)
chr4 (43-110)||(18075901-18075970)
[»] scaffold0349 (2 HSPs)
scaffold0349 (176-285)||(15242-15351)
scaffold0349 (12-96)||(15404-15487)
[»] chr1 (2 HSPs)
chr1 (1-287)||(266278-266561)
chr1 (149-270)||(28125749-28125870)
[»] chr8 (3 HSPs)
chr8 (147-239)||(22023251-22023343)
chr8 (176-289)||(29271933-29272046)
chr8 (12-118)||(29271797-29271905)
[»] chr2 (1 HSPs)
chr2 (147-288)||(17991277-17991418)
[»] scaffold0003 (1 HSPs)
scaffold0003 (43-110)||(61709-61778)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27590930 - 27591218
Alignment:
Q  1 atattcaaaatggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatact 100  Q
    ||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27590930 atattcacaatggtccaatatcaagattgtcatatcctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatact 27591029  T
Q  101 ttcatagtgatttcttttctgttgctgaaaaagaaatcattgtacattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27591030 ttcatagtgatttcttttctgttgctgaaaaagaaatcattgtacattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaat 27591129  T
Q  201 actagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27591130 actagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 27591218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27675527 - 27675815
Alignment:
Q  1 atattcaaaatggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatact 100  Q
    ||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27675527 atattcacaatggtccaatatcaagattgtcatatcctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatact 27675626  T
Q  101 ttcatagtgatttcttttctgttgctgaaaaagaaatcattgtacattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaat 200  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27675627 ttcatagtgatttcttttatgttggcgaaaaagaaatcattgtacattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaat 27675726  T
Q  201 actagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27675727 actagacgagagagactttgataaacatccttcccatttcaatgctttcaaactgcttggaagatgcttgagacctttagaacaatggc 27675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 27704172 - 27704452
Alignment:
Q  9 aatggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatactttcatagt 108  Q
    ||||||||||| | |||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27704172 aatggtccaatgtcaagactgtcatatccgggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatactttcatagt 27704271  T
Q  109 gatttcttttctgttgctgaaaaagaaatcattgtacattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacg 208  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  27704272 gatttcttttatgttgtcgaaaaagaaatcattgtacattataaatatatacagttataaaatgaagttatttcacttgccttgcttaaaatactagacg 27704371  T
Q  209 atagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27704372 atagagactttgataaacatccttcccatttcaatgctttcaaactgcttggaagatacttgagacctttagaacaatggc 27704452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 26648659 - 26648409
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaa 135  Q
    ||||||||||||||||||||||| |||| |||| | ||||||||||||||| ||||||||||||| |||||||||||| |||| |||||  | |||  ||    
T  26648659 ctggaacttctgcataaacacaa-ggaacaaacaaataaataaattaaaaatcaaacactatactctcatagtgatttgtttt-tgttgacggaaacaaa 26648562  T
Q  136 atcattgtacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcc 234  Q
    ||||||||  ||| ||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||| |||||||||| |||||||||||||| |    
T  26648561 atcattgtgaatttataaatatatacaattagaaaatgaagttatataacttgccttgcttaaaatactagatgatagagactctgataaacatcctttc 26648462  T
Q  235 catttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatg 287  Q
    ||||||||| || ||||||||||| ||||||| || |||||||||||| ||||    
T  26648461 catttcaatactctcaaactgcttggaagatatttaagacctttagaaaaatg 26648409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 26754627 - 26754377
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaa 135  Q
    ||||||||||||||||||||||| |||| |||| | ||||||||||||||| ||||||||||||| |||||||||||| |||| |||||  | |||  ||    
T  26754627 ctggaacttctgcataaacacaa-ggaacaaacaaataaataaattaaaaatcaaacactatactctcatagtgatttgtttt-tgttgacggaaacaaa 26754530  T
Q  136 atcattgtacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcc 234  Q
    ||||||||  ||| ||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||| |||||||||| |||||||||||||| |    
T  26754529 atcattgtgaatttataaatatatacaattagaaaatgaagttatataacttgccttgcttaaaatactagatgatagagactctgataaacatcctttc 26754430  T
Q  235 catttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatg 287  Q
    ||||||||| || ||||||||||| ||||||| || |||||||||||| ||||    
T  26754429 catttcaatactctcaaactgcttggaagatatttaagacctttagaaaaatg 26754377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 26625447 - 26625205
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaaa 136  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||   ||||    |||  |||    
T  26625447 ctggaacttctgcataaacacaa-ggaagaaacaataaataaattaaaaatcaaacactatactctcatagtgacttcttt---gttgacataaacaaaa 26625352  T
Q  137 tcattgt-acattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttccc 235  Q
    ||||||| |  ||||||||||||||| |||||||||||  | ||||||||||||||| | |||| |||||  ||||||||||  ||||||||||||| ||    
T  26625351 tcattgtgagtttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccgataaacatcctttcc 26625252  T
Q  236 atttcaatgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||    
T  26625251 atttcaatactctcaaactgcttggaagatacttgagacctttagaa 26625205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 26731424 - 26731182
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaaa 136  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||   ||||    |||  |||    
T  26731424 ctggaacttctgcataaacacaa-ggaagaaacaataaataaattaaaaatcaaacactatactctcatagtgacttcttt---gttgacataaacaaaa 26731329  T
Q  137 tcattgt-acattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttccc 235  Q
    ||||||| |  ||||||||||||||| |||||||||||  | ||||||||||||||| | |||| |||||  ||||||||||  ||||||||||||| ||    
T  26731328 tcattgtgagtttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccgataaacatcctttcc 26731229  T
Q  236 atttcaatgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||    
T  26731228 atttcaatactctcaaactgcttggaagatacttgagacctttagaa 26731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 28794586 - 28794333
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaa 135  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||  |||||||||||| ||||||||||||||| | |||||  |||||  ||    
T  28794586 ctggaacttctgcataaacacaa-ggaagaaacaaataaataaattaaaaattaaacactatactatcatagtgatttcttctttgttggcgaaaacaaa 28794488  T
Q  136 atcattgtacatta-taaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcc 234  Q
    ||||||||| |||| |||||||||||| | |||||||||  ||||||||||||||||||||||| |||| ||  | ||||||| ||||||||||||        
T  28794487 atcattgtaaattaataaatatatacaataagaaaatgaagttatttcacttgccttgcttaaactacttgataacagagactctgataaacatccacgt 28794388  T
Q  235 catttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
     |||||||| || ||||||| ||| ||||||| ||||||||||||||| ||||||    
T  28794387 aatttcaatactctcaaactacttggaagatagttgagacctttagaaaaatggc 28794333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 28788465 - 28788212
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaaagaa 135  Q
    |||||| |||||||||||||||| ||||||||| | |||||||||||||||  |||||||||||| ||||||||||||||| | |||||  |||||  ||    
T  28788465 ctggaaattctgcataaacacaa-ggaagaaacaaataaataaattaaaaattaaacactatactatcatagtgatttcttctttgttggcgaaaacaaa 28788367  T
Q  136 atcattgtacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcc 234  Q
    ||||||||| ||| ||||||||||||| | |||||||||  ||||||||||||||||||||||| |||  ||  | ||||||| ||||||||||||        
T  28788366 atcattgtaaattaataaatatatacaataagaaaatgaagttatttcacttgccttgcttaaactacatgataaaagagactctgataaacatccacgt 28788267  T
Q  235 catttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
     |||||||| || ||||||| ||| ||||||| ||||||||||||||| ||||||    
T  28788266 aatttcaatactctcaaactacttggaagatagttgagacctttagaaaaatggc 28788212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 26804692 - 26804443
Alignment:
Q  38 tggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttg-ctgaaaaagaa 135  Q
    ||||| |||||||||||||||| ||||||||| | |||||||||| |||| ||||||| ||||| ||||||||| || |||| ||||| | |||| | ||    
T  26804692 tggaaattctgcataaacacaa-ggaagaaacaaataaataaattcaaaaccaaacacaatactctcatagtgaattgtttt-tgttgacagaaaca-aa 26804596  T
Q  136 atcattgtacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcc 234  Q
    |||||  || ||| | ||||||||||  ||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| |    
T  26804595 atcataataaatttacaaatatatacttttataaaatgaagttatttcacttgccttgcttaaaatactagatgatagagactccgataaacatcctttc 26804496  T
Q  235 catttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatg 287  Q
    ||||||||| || ||||||||||| |||||||||||||||||| |||| ||||    
T  26804495 catttcaatactatcaaactgcttggaagatacttgagaccttcagaaaaatg 26804443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 27716594 - 27716707
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| ||||||| ||||| || ||| |||| ||||||||||||| |||||||||| |  ||||||||||| ||||||||||||||||    
T  27716594 ttatttcacttgccttgtttaaaatcctagatgacagacacttcgataaacatcctttccatttcaatacactcaaactgcttggaagatacttgagacc 27716693  T
Q  276 tttagaacaatggc 289  Q
    ||||||||||||||    
T  27716694 tttagaacaatggc 27716707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 31286669 - 31286527
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgct 246  Q
    |||||||| |||||| ||| |||||||  ||| ||||||||||||||||||||||||||| ||||||||||   |||||||||||| |||||||||| ||    
T  31286669 ttataaatgtatacaattataaaatgaagttacttcacttgccttgcttaaaatactagatgatagagactccaataaacatcctttccatttcaatact 31286570  T
Q  247 ttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
     |||||||| || ||||||||||||| || || ||| ||||||    
T  31286569 ctcaaactgtttggaagatacttgagtccattggaaaaatggc 31286527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 27681049 - 27680949
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||||| |||||||||| |   |||||||||| ||||||||||||||||    
T  27681049 ttatttcacttgccttgtttaaaatactagatgacagacacttcgataaacatcctttccatttcaatacacgcaaactgcttggaagatacttgagacc 27680950  T
Q  276 t 276  Q
    |    
T  27680949 t 27680949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 27609215 - 27609328
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| |||||||| |||| || ||| |||| ||||||||||||| |||||||||| |   |||||||||| |||||||||| |||||    
T  27609215 ttatttcacttgccttgtttaaaatattagatgacagacacttcgataaacatcctttccatttcaatacacgcaaactgcttggaagatacttcagacc 27609314  T
Q  276 tttagaacaatggc 289  Q
    |  |||| ||||||    
T  27609315 tccagaaaaatggc 27609328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 27696684 - 27696797
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| ||||||||||||  || ||| |||| ||||||||||| | |||||||||| |  ||||||| ||| | |||| |||||||||    
T  27696684 ttatttcacttgccttgtttaaaatactagttgacagacacttcgataaacatcccttccatttcaatacactcaaacttcttggtagatgcttgagacc 27696783  T
Q  276 tttagaacaatggc 289  Q
    || |||| ||||||    
T  27696784 ttcagaaaaatggc 27696797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 26886157 - 26886044
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    |||||| |||||||||||| ||||||||||| |||||||||| |||   |||||||| |||||| ||| || |||||||  || ||||||||||  ||||    
T  26886157 ttattttacttgccttgctaaaaatactagatgatagagactctgaagtacatcctttccatttaaatactctcaaactatttggaagatacttcggacc 26886058  T
Q  276 tttagaacaatggc 289  Q
    ||| ||| ||||||    
T  26886057 tttggaaaaatggc 26886044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27696538 - 27696658
Alignment:
Q  1 atattcaaaatggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacacta---- 96  Q
    ||||||| ||| ||||||| | ||||||  ||||  ||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |||| ||||        
T  27696538 atattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaacac-aagaaagaaacaataaataaactaaaaatcaaagactaatat 27696636  T
Q  97 tactttcatagtgatttctttt 118  Q
    |||||||||| |||||||||||    
T  27696637 tactttcatactgatttctttt 27696658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 26825932 - 26825864
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagaga 215  Q
    ||||||||||| ||| || ||||||||  ||||||||||||||||| | ||||||||||| ||||||||    
T  26825932 ttataaatatacacaattggaaaatgaacttatttcacttgccttgttcaaaatactagatgatagaga 26825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 27602770 - 27602842
Alignment:
Q  146 attataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactt 218  Q
    |||||||||||| ||| ||  ||||||| |||||||||||||||||| | ||||||| ||| |||||||||||    
T  27602770 attataaatatacacaattgaaaaatgaatttatttcacttgccttgttcaaaatacaagatgatagagactt 27602842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 27716458 - 27716541
Alignment:
Q  12 ggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacacta 96  Q
    |||||||||| |||| |  |||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |||| ||||    
T  27716458 ggtccaatatcaagactttcatatcctggaacttctgcataaacac-aagaaagaaacaataaataaactaaaaatcaaagacta 27716541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 26658068 - 26657953
Alignment:
Q  167 aaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagata 266  Q
    |||||||  ||||||||||||||||| || |||||| ||| ||||||||||| ||   |||||||| |||||||||   | ||||||| ||| ||||||     
T  26658068 aaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaaggacatcctttccatttcaaaaatctcaaactacttggaagatg 26657969  T
Q  267 cttgagacctttagaa 282  Q
     ||  |||||||||||    
T  26657968 ttttggacctttagaa 26657953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 26764039 - 26763924
Alignment:
Q  167 aaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagata 266  Q
    |||||||  ||||||||||||||||| || |||||| ||| ||||||||||| ||   |||||||| |||||||||   | ||||||| ||| ||||||     
T  26764039 aaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaaggacatcctttccatttcaaaaatctcaaactacttggaagatg 26763940  T
Q  267 cttgagacctttagaa 282  Q
     ||  |||||||||||    
T  26763939 ttttggacctttagaa 26763924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 27663347 - 27663402
Alignment:
Q  227 atccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    |||||| |||||||||| || |||||||  || |||||||||||||||||||||||    
T  27663347 atcctttccatttcaatactatcaaactttttggaagatacttgagacctttagaa 27663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 26863710 - 26863568
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgct 246  Q
    ||||||||||| ||| || ||||||||  |||| |||||||||||| | |||| || ||| ||||||||||| ||   | |||||| |||||| ||| ||    
T  26863710 ttataaatatacacaattggaaaatgaaattatatcacttgccttgttcaaaaaacaagatgatagagacttggaaggatatcctttccattttaatact 26863611  T
Q  247 ttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
     ||||||  |||  ||| || ||| ||||||||||| ||||||    
T  26863610 ctcaaacaacttgaaaggtatttgggacctttagaaaaatggc 26863568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 27425585 - 27425654
Alignment:
Q  43 cttctgcataaacacaaaggaagaaactataaataaat---taaaaagcaaacactatactttcatagtga 110  Q
    |||||||||||||||| || ||||||| | ||||||||   |||||| ||||||||||||| |||||||||    
T  27425585 cttctgcataaacacacag-aagaaacaaaaaataaataaataaaaaccaaacactatactctcatagtga 27425654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 11637 - 11891
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaa-aga 134  Q
    |||||| |||||||||||||||| ||||||||| | |||||||||||||||  |||||||||||| ||||||||||||||| | ||||| |||||| | |    
T  11637 ctggaaattctgcataaacacaa-ggaagaaacaaataaataaattaaaaattaaacactatactatcatagtgatttcttctttgttggtgaaaacaaa 11735  T
Q  135 aatcattgtacatta-taaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttc 233  Q
    |||||||||| |||| |||||||||||| | |||||||||  ||||||||||||||||||||||| |||  ||  ||||||||| |||||||||||| |     
T  11736 aatcattgtaaattaataaatatatacaataagaaaatgaagttatttcacttgccttgcttaaactacatgataatagagactctgataaacatccatg 11835  T
Q  234 ccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatggc 289  Q
      |||||||| || ||||||||||| ||||||||||||||||||||||| ||||||    
T  11836 taatttcaatactctcaaactgcttggaagatacttgagacctttagaaaaatggc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 2674 - 2927
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaa-aga 134  Q
    ||||||||||||||||||||||| ||||||||| | ||||| |||||||||  |||||||||||| |||||| |||||||| | |||||  ||||| | |    
T  2674 ctggaacttctgcataaacacaa-ggaagaaacaaataaattaattaaaaattaaacactatactatcatagcgatttcttctttgttggcgaaaacaaa 2772  T
Q  135 aatcattgtacatta-taaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttc 233  Q
    |||||||||| |||| |||||||||||| | |||||||||  ||||||||||| ||||||||||| |||  ||  ||||||||| ||||||||||||       
T  2773 aatcattgtaaattaataaatatatacaataagaaaatgaagttatttcacttaccttgcttaaactacatgataatagagactctgataaacatccacg 2872  T
Q  234 ccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatgg 288  Q
      |||||||| || ||||||||||| ||||||||||||||||||||||| |||||    
T  2873 taatttcaatactctcaaactgcttggaagatacttgagacctttagaaaaatgg 2927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 9712 - 9459
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaa-aga 134  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||  |||||||||||| |||||| |||||||| | |||||  ||||| | |    
T  9712 ctggaacttctgcataaacacaa-ggaagaaacaaataaataaattaaaaattaaacactatactatcatagcgatttcttctttgttggcgaaaacaaa 9614  T
Q  135 aatcattgtacatta-taaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttc 233  Q
    |||||||||| |||| |||||||||||| | |||||||||  ||||||||||| ||||||||||| |||  ||  ||||||||| ||||||||||||       
T  9613 aatcattgtaaattaataaatatatacaataagaaaatgaagttatttcacttaccttgcttaaactacatgataatagagactctgataaacatccacg 9514  T
Q  234 ccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatgg 288  Q
      |||||||| || ||||||||||| ||||||||||||||||||||||| |||||    
T  9513 taatttcaatactctcaaactgcttggaagatacttgagacctttagaaaaatgg 9459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 993 - 740
Alignment:
Q  37 ctggaacttctgcataaacacaaaggaagaaacta-taaataaattaaaaagcaaacactatactttcatagtgatttcttttctgttgctgaaaa-aga 134  Q
    ||||||||||||||||||||||| ||||||||| | ||||| |||||||||  |||||||||||| |||||| |||||||| | |||||  ||||| | |    
T  993 ctggaacttctgcataaacacaa-ggaagaaacaaataaattaattaaaaattaaacactatactatcatagcgatttcttctttgttggcgaaaacaaa 895  T
Q  135 aatcattgtacatta-taaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttc 233  Q
    |||||||||| |||| |||||||||||| | |||||||||  |||||||| || ||||||||||| |||  ||   |||||||| ||||||||||||       
T  894 aatcattgtaaattaataaatatatacaataagaaaatgaagttatttcattttccttgcttaaactacatgatattagagactctgataaacatccacg 795  T
Q  234 ccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatgg 288  Q
      |||||||| || ||||||||||| ||||||||||||||||||||||| |||||    
T  794 taatttcaatactctcaaactgcttggaagatacttgagacctttagaaaaatgg 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 18677587 - 18677824
Alignment:
Q  45 tctgcataaacacaaaggaagaaactat-aaataaattaaaaagcaaacactatactttcatagtgat-ttcttttctgttgctgaaaaagaaatcattg 142  Q
    ||||||||||||||||| ||||||| |  |||||||||||||| ||||||||||||| |||||||||| || |||||| |  | |||| | |||||||||    
T  18677587 tctgcataaacacaaag-aagaaacaaacaaataaattaaaaatcaaacactatactctcatagtgatattattttct-tgacagaaaca-aaatcattg 18677683  T
Q  143 tacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttca 241  Q
    |  ||| ||||||||||||| |||||||||||  ||||||||||||||||||   ||||| |||| |||||||||| |||  ||||||| | ||||||||    
T  18677684 tgaatttataaatatatacaattagaaaatgaaattatttcacttgccttgcaacaaataatagatgatagagactctgaacaacatccattccatttca 18677783  T
Q  242 atgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    || || ||||||| ||| |||||||||||||||||||||||    
T  18677784 atactctcaaactccttggaagatacttgagacctttagaa 18677824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 18653505 - 18653742
Alignment:
Q  45 tctgcataaacacaaaggaagaaactat-aaataaattaaaaagcaaacactatactttcatagtgat-ttcttttctgttgctgaaaaagaaatcattg 142  Q
    ||||||||||||||||| ||||||| |  |||||||||||||| ||||||||||||| |||||||||| || |||||| |  | |||| | |||||||||    
T  18653505 tctgcataaacacaaag-aagaaacaaacaaataaattaaaaatcaaacactatactctcatagtgatattattttct-tgacagaaaca-aaatcattg 18653601  T
Q  143 tacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttca 241  Q
    |  ||| ||||||||||||| |||||||||||  ||||||||||||||||||   ||||| |||| |||||||||| |||  ||||||| | | ||||||    
T  18653602 tgaatttataaatatatacaattagaaaatgaaattatttcacttgccttgcagcaaataatagatgatagagactctgaagaacatccattcaatttca 18653701  T
Q  242 atgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    || || ||||||||||| ||||||||||| || ||||||||    
T  18653702 atactctcaaactgcttggaagatacttgggatctttagaa 18653742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 18729523 - 18729760
Alignment:
Q  45 tctgcataaacacaaaggaagaaactat-aaataaattaaaaagcaaacactatactttcatagtgat-ttcttttctgttgctgaaaaagaaatcattg 142  Q
    |||||||||||| |||| ||||||| |  ||||||||||||||  |||||||||||| |||||||||| || |||||| |  | |||| | |||||||||    
T  18729523 tctgcataaacaaaaag-aagaaacaaacaaataaattaaaaataaaacactatactctcatagtgatattattttct-tgacagaaaca-aaatcattg 18729619  T
Q  143 tacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttca 241  Q
    |  ||| ||||||||||||| |||||||||||  ||||||||||||||||||  ||||||  ||| |||||||||| |||  ||||||| | | ||||||    
T  18729620 tgaatttataaatatatacaattagaaaatgaaattatttcacttgccttgcagaaaataaaagatgatagagactctgaagaacatccattcaatttca 18729719  T
Q  242 atgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    || || ||||||||||| ||||||||||| || ||||||||    
T  18729720 atactctcaaactgcttggaagatacttgggatctttagaa 18729760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 18722101 - 18722338
Alignment:
Q  45 tctgcataaacacaaaggaagaaactat-aaataaattaaaaagcaaacactatactttcatagtgat-ttcttttctgttgctgaaaaagaaatcattg 142  Q
    ||||||||||||||||| ||||||| |  ||||||||||||||  |||||||||||| |||||||||| || ||||||  ||    |||  |||||||||    
T  18722101 tctgcataaacacaaag-aagaaacaaacaaataaattaaaaataaaacactatactctcatagtgatattattttct--tgacataaacaaaatcattg 18722197  T
Q  143 tacatt-ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttca 241  Q
    |  ||| ||||||||||||| |||||||||||  |||||||||||||||||||  ||||| |||| |||||||||  |||  ||||||  | | ||||||    
T  18722198 tgaatttataaatatatacaattagaaaatgaaattatttcacttgccttgctgcaaataatagatgatagagacactgaggaacatcgattcaatttca 18722297  T
Q  242 atgctttcaaactgcttcgaagatacttgagacctttagaa 282  Q
    || || ||||||||||| ||||||||||| || ||||||||    
T  18722298 atactctcaaactgcttggaagatacttgggatctttagaa 18722338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 18697531 - 18697666
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgct 246  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||  |||||| ||| |||||||||| ||   ||||||| | | |||||||| ||    
T  18697531 ttataaatatatacaattagaaaatgaaattatttcacttgccttgctgcaaatacaagatgatagagactctgtagaacatccattcaatttcaatact 18697630  T
Q  247 ttcaaactgcttcgaagatacttgagacctttagaa 282  Q
     ||||||||||| ||||||||||| || ||||||||    
T  18697631 ctcaaactgcttggaagatacttgggatctttagaa 18697666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 18687743 - 18687876
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgct 246  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||   ||||| ||| |||||||||| ||   ||||||| | | |||||||| ||    
T  18687743 ttataaatatatacatttagaaaatgaaattatttcacttgccttgctgccaatacaagatgatagagactctgtagaacatccattcaatttcaatact 18687842  T
Q  247 ttcaaactgcttcgaagatacttgagacctttag 280  Q
     ||||||||||| ||||||||||| || ||||||    
T  18687843 ctcaaactgcttggaagatacttgggatctttag 18687876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 18075970 - 18075901
Alignment:
Q  43 cttctgcataaacacaaaggaagaaactataaataaat---taaaaagcaaacactatactttcatagtga 110  Q
    |||||||||||||||| || ||||||| | ||||||||   |||||| ||||||||||||| |||||||||    
T  18075970 cttctgcataaacacacag-aagaaacaaaaaataaataaataaaaaccaaacactatactctcatagtga 18075901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 15351 - 15242
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| ||||||| ||||| || ||| |||| ||||||||||||| |||||||||| |  ||||||||||| ||||||||||||||||    
T  15351 ttatttcacttgccttgtttaaaatcctagatgacagacacttcgataaacatcctttccatttcaatacactcaaactgcttggaagatacttgagacc 15252  T
Q  276 tttagaacaa 285  Q
    ||||||||||    
T  15251 tttagaacaa 15242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 15487 - 15404
Alignment:
Q  12 ggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacacta 96  Q
    |||||||||| |||| |  |||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |||| ||||    
T  15487 ggtccaatatcaagactttcatatcctggaacttctgcataaacac-aagaaagaaacaataaataaactaaaaatcaaagacta 15404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 266278 - 266561
Alignment:
Q  1 atattcaaaatggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacactatact 100  Q
    ||||||| ||||||| ||||| ||||    |||| ||||||||||||||||| |||||| |  |||||| ||||||||| |||||| |||| ||||||||    
T  266278 atattcacaatggtctaatatcaagacattcatatcctggaacttctgcatacacacaagg--agaaacaataaataaactaaaaatcaaagactatact 266375  T
Q  101 ttcatagtgatttcttttctgttgctgaaaaagaaatcattgt-acattataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaa 199  Q
     |||||||||||  |||| |||||  | |||  |||||||||| |  || ||||||||||||  ||||||||||  | ||||||||||||||| |  |||    
T  266376 ctcatagtgatt--ttttttgttgacgtaaacaaaatcattgtgagtttctaaatatatacaaatagaaaatgaaatcatttcacttgccttgttcgaaa 266473  T
Q  200 tactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacctttagaacaatg 287  Q
     || ||| ||||  ||||  ||   | |||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||    
T  266474 aacaagatgataatgactccgaagtaaatcctttccatttcaatactttcaaactgcttcgaaggtacttcagacctttagaaaaatg 266561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 28125749 - 28125870
Alignment:
Q  149 ataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgcttt 248  Q
    ||||||||| ||| || ||||||||  ||||||||||||||||| | |||| |||||| ||||||||||| |    | ||||||||||| ||||| || |    
T  28125749 ataaatatacacaatttgaaaatgaacttatttcacttgccttgttcaaaaaactagatgatagagacttcgcattatatccttcccatatcaatactct 28125848  T
Q  249 caaactgcttcgaagatacttg 270  Q
    |||| | ||| |||||||||||    
T  28125849 caaagtacttggaagatacttg 28125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 22023343 - 22023251
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccattt 239  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||| ||||||    
T  22023343 ttataaatatatacaattagaaagtgaagttatttcacttgccttgctcaaaatactagatgatagagactccgataaacatcctttccattt 22023251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 29271933 - 29272046
Alignment:
Q  176 ttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgctttcaaactgcttcgaagatacttgagacc 275  Q
    ||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||||| |||||||||| |  ||||||| ||| | | || |||||||||    
T  29271933 ttatttcacttgccttgtttaaaatactagatgacagacacttcgataaacatcctttccatttcaatacactcaaacttcttggtaaatgcttgagacc 29272032  T
Q  276 tttagaacaatggc 289  Q
    |  |||| ||||||    
T  29272033 tccagaaaaatggc 29272046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 29271797 - 29271905
Alignment:
Q  12 ggtccaatataaagattggcataacctggaacttctgcataaacacaaaggaagaaactataaataaattaaaaagcaaacact---atactttcatagt 108  Q
    |||||||||| |||| |  |||| |||| ||||||||||||||||| ||| ||||||| ||||||||| |||||| |||| |||   |||||||||||||    
T  29271797 ggtccaatatcaagactttcatatcctgaaacttctgcataaacac-aagaaagaaacaataaataaactaaaaatcaaagactataatactttcatagt 29271895  T
Q  109 gatttctttt 118  Q
    ||||||||||    
T  29271896 gatttctttt 29271905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 288
Target Start/End: Original strand, 17991277 - 17991418
Alignment:
Q  147 ttataaatatatacagttagaaaatgattttatttcacttgccttgcttaaaatactagacgatagagactttgataaacatccttcccatttcaatgct 246  Q
    ||||||||||| ||| ||  |||||||  ||||||||||||||||  |  ||| || ||| ||||||||||||||   |||||||| |||||||||| ||    
T  17991277 ttataaatatacacaattccaaaatgaaattatttcacttgccttattcgaaaaacaagatgatagagactttgaaggacatcctttccatttcaatact 17991376  T
Q  247 ttcaaactgcttcgaagatacttgagacctttagaacaatgg 288  Q
     |||||||  || ||||||||||| |||||| |||| |||||    
T  17991377 ctcaaactatttggaagatacttgggaccttcagaaaaatgg 17991418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 61778 - 61709
Alignment:
Q  43 cttctgcataaacacaaaggaagaaactataaataaat---taaaaagcaaacactatactttcatagtga 110  Q
    |||||||||||||||| || ||||||| | ||||||||   |||||| ||||||||||||| |||||||||    
T  61778 cttctgcataaacacacag-aagaaacaaaaaataaataaataaaaaccaaacactatactctcatagtga 61709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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