View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_18 (Length: 284)
Name: NF14146_low_18
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 32907075 - 32907347
Alignment:
| Q |
20 |
tcataagttcgaaaattcaaactaagtgctcatatagctgtaaccaacaaattatacatgagtgtagaaaaaagatattgaggtgagtaaattaagatga |
119 |
Q |
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| T |
32907075 |
tcataagttcaaaaattcaaactaagtgctcatatagctgtaaccaacaaattatacatgagtgtagaaaaaagaaattgaggtgagtaaattaagatga |
32907174 |
T |
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| Q |
120 |
agaaataatacagctgttttcaacaggtttggaaaaaatcac-------------tacacaataaatcagtatcacttggat---------tttaccatg |
197 |
Q |
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| T |
32907175 |
agaaataatacagctgttttcaacaggtttggaaaaaatcactacccaaccattttacacaataaatcagtatcacttggattttatccagtttatcatg |
32907274 |
T |
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| Q |
198 |
gtagttgcttgctatgagttgagcatgtatatggcaataaatggagaaaaaactaaacattatcatggataat |
270 |
Q |
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| T |
32907275 |
ggagttgcttgctatgagttgagcatgtatatggcaataaatggagaaaaaactaaacattatcatggataat |
32907347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 32694936 - 32694890
Alignment:
| Q |
32 |
aaattcaaactaagtgctcatatagctgtaaccaacaaattatacat |
78 |
Q |
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| T |
32694936 |
aaattcaaactaagtgctcatatagctgtaaccaacaaattatacat |
32694890 |
T |
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