View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14146_low_19 (Length: 282)

Name: NF14146_low_19
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14146_low_19
NF14146_low_19
[»] chr6 (33 HSPs)
chr6 (18-282)||(27591271-27591535)
chr6 (18-282)||(27675868-27676134)
chr6 (165-282)||(27704666-27704783)
chr6 (141-282)||(28787915-28788059)
chr6 (141-282)||(28794036-28794180)
chr6 (113-282)||(27680624-27680793)
chr6 (113-281)||(27609471-27609639)
chr6 (113-281)||(27716850-27717018)
chr6 (113-280)||(27696940-27697107)
chr6 (113-282)||(26804120-26804290)
chr6 (113-278)||(31286222-31286378)
chr6 (147-282)||(27603079-27603215)
chr6 (176-282)||(26648132-26648241)
chr6 (176-282)||(26754100-26754209)
chr6 (197-282)||(26624924-26625009)
chr6 (197-282)||(26730901-26730986)
chr6 (19-91)||(27425871-27425943)
chr6 (18-91)||(31286401-31286474)
chr6 (18-85)||(26625078-26625145)
chr6 (18-85)||(26648287-26648354)
chr6 (18-85)||(26731055-26731122)
chr6 (18-85)||(26754255-26754322)
chr6 (18-91)||(27609381-27609454)
chr6 (18-91)||(27680810-27680883)
chr6 (18-91)||(27696850-27696923)
chr6 (18-91)||(27716760-27716833)
chr6 (195-280)||(26863235-26863320)
chr6 (229-282)||(27529774-27529827)
chr6 (226-282)||(26813211-26813267)
chr6 (18-85)||(28788092-28788159)
chr6 (18-85)||(28794213-28794280)
chr6 (197-273)||(27426049-27426126)
chr6 (35-91)||(25491578-25491634)
[»] scaffold1870 (1 HSPs)
scaffold1870 (141-282)||(443-585)
[»] scaffold0277 (4 HSPs)
scaffold0277 (141-282)||(3081-3223)
scaffold0277 (141-282)||(12044-12186)
scaffold0277 (18-85)||(2981-3048)
scaffold0277 (18-85)||(11944-12011)
[»] scaffold0419 (1 HSPs)
scaffold0419 (141-282)||(9161-9304)
[»] chr1 (4 HSPs)
chr1 (170-282)||(266757-266869)
chr1 (18-91)||(266616-266689)
chr1 (138-258)||(28126064-28126184)
chr1 (135-258)||(28131872-28131996)
[»] chr8 (2 HSPs)
chr8 (148-281)||(29272224-29272357)
chr8 (18-91)||(29272099-29272172)
[»] scaffold0349 (1 HSPs)
scaffold0349 (181-281)||(1957-2058)
[»] scaffold0003 (2 HSPs)
scaffold0003 (19-91)||(61420-61492)
scaffold0003 (197-273)||(61237-61314)
[»] chr4 (2 HSPs)
chr4 (19-90)||(18075613-18075684)
chr4 (197-273)||(18075429-18075506)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 27591271 - 27591535
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaacnnnnnnnnnnnnnnnnnntgcatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||    
T  27591271 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaacaaaaataaaaataaaaaatgcatcaa 27591370  T
Q  118 ccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaagttgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27591371 ccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaagttgta 27591470  T
Q  218 ttaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27591471 ttaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 27591535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 27675868 - 27676134
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaacnnnnnnnnnnnnnnnnnntgcatcaa 117  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||                  ||||||||    
T  27675868 tttcttgtctattacggattccatggagtgcaaattcatacatatcatttcagttttaccagttcccttttaacaaaaataaaaataaaaaatgcatcaa 27675967  T
Q  118 ccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaata--tactagtatgagatggtcatatttagtccaaaatgagcaaagttg 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| |||    
T  27675968 ccacaataaaaatcttttacagagaaatttacatgtaattaagtggaaaaaaaaatactaatatgagatggtcatatttagtccaaaatgagcaaaattg 27676067  T
Q  216 tattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27676068 tattaaaactaaataacaaattgaacatagatatcaatcttactcacagtgttttctgttaaaacat 27676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 27704666 - 27704783
Alignment:
Q  165 aaaatatactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacag 264  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  27704666 aaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatattaaaactaaataacaaaatgatcatagatatcaatcttactcacag 27704765  T
Q  265 tgttttcttttaaaacat 282  Q
    ||||||||||||| ||||    
T  27704766 tgttttcttttaagacat 27704783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 28788059 - 28787915
Alignment:
Q  141 gaaatttacatgtaattaagtg--gaaaa-atatactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaatt 237  Q
    ||||||||||||||||||| ||  ||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||    
T  28788059 gaaatttacatgtaattaaatgaagaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaatt 28787960  T
Q  238 gaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  28787959 gaacataaatatcaatcatactcacggtgttttcttttaaaacat 28787915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 28794180 - 28794036
Alignment:
Q  141 gaaatttacatgtaattaagtg--gaaaa-atatactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaatt 237  Q
    ||||||||||||||||||| ||  ||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||    
T  28794180 gaaatttacatgtaattaaatgaagaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaatt 28794081  T
Q  238 gaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  28794080 gaacataaatatcaatcatactcacggtgttttcttttaaaacat 28794036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 27680793 - 27680624
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 212  Q
    ||||||||||||||||||  |  | ||| | ||| |||||||||| |||| ||| | || ||||||| ||||| ||||||||||| ||||| ||||||||    
T  27680793 atcaaccacaataaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagagcaaag 27680694  T
Q  213 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    | ||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  27680693 tcgtattaaaactaaataacaaaatgatcatagatatcaatcatactcacagtgttttcttttaaaacat 27680624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 281
Target Start/End: Original strand, 27609471 - 27609639
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 212  Q
    ||||||||||||||||||  |  | ||| | ||| |||||||||| |||| ||| | || ||||||| ||||| ||||||||||| ||||| ||||||||    
T  27609471 atcaaccacaataaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagagcaaag 27609570  T
Q  213 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaaca 281  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||    
T  27609571 tcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaaca 27609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 281
Target Start/End: Original strand, 27716850 - 27717018
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 212  Q
    ||||||||||||||||||  | || ||| | ||| |||||||||| |||| ||| | || || || | ||||| ||||||||||| ||||| ||||||||    
T  27716850 atcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctcgttttagatgatcatatttagttcaaaaagagcaaag 27716949  T
Q  213 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaaca 281  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||    
T  27716950 ttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaaca 27717018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 27696940 - 27697107
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 212  Q
    ||||||||||||||||||  | || ||| | ||| |||||||||| |||| ||| | || ||||||| ||||| ||||||||||| ||||  ||||||||    
T  27696940 atcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaatagagcaaag 27697039  T
Q  213 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaac 280  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||    
T  27697040 tcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaac 27697107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 26804290 - 26804120
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaata-tactagtatgagatggtcatatttagtccaaaatgagcaaa 211  Q
    ||||| |||||||| |||  | || ||||||||||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||| |||   |||||    
T  26804290 atcaatcacaataacaataagatatagagaaatttatatgtaattaagtgaaaaaaaaatactagtatgagatggtcatatgtagtcctaaaaatgcaaa 26804191  T
Q  212 gttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    || ||||  |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||    
T  26804190 gtcgtatctaaactaaataacaaattgaacataaatatcaatcttactcacaatgttttcttttataacat 26804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 31286378 - 31286222
Alignment:
Q  113 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 212  Q
    ||||||||||||||||||  | ||  |||||||||||||||||||||||  ||| | ||||||||||||||||||||||         ||| ||||||||    
T  31286378 atcaaccacaataaaaataagatatggagaaatttacatgtaattaagtaaaaataaatactagtatgagatggtcata---------aaaagagcaaag 31286288  T
Q  213 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaa 278  Q
    | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  31286287 tcgttttaaaactaaataacaaattgaacatagatatcaatcttactcacagtgttttcatttaaa 31286222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 27603079 - 27603215
Alignment:
Q  147 tacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagc-aaagttgtattaaaactaaataacaaattgaacatag 245  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| || | |||||  ||||||||||||||||||||||||   ||     
T  27603079 tacatgtaattaagtggaaaaaaataatagtatgagatgatcatatttagtccaaaaagaccaaaagtcatattaaaactaaataacaaattgatattat 27603178  T
Q  246 atatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||||| ||||||||||||| ||| |||||    
T  27603179 atatcaatcttactcacagtgttttctgttagaacat 27603215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 26648241 - 26648132
Alignment:
Q  176 gtatgagatggtcatatttagt---ccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttct 272  Q
    ||||||||||||||||| || |   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  26648241 gtatgagatggtcatatatatttatccaaattgagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttct 26648142  T
Q  273 tttaaaacat 282  Q
    ||||||||||    
T  26648141 tttaaaacat 26648132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 26754209 - 26754100
Alignment:
Q  176 gtatgagatggtcatatttagt---ccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttct 272  Q
    ||||||||||||||||| || |   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  26754209 gtatgagatggtcatatatatttatccaaattgagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttct 26754110  T
Q  273 tttaaaacat 282  Q
    ||||||||||    
T  26754109 tttaaaacat 26754100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 26625009 - 26624924
Alignment:
Q  197 tccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  26625009 tccaaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacat 26624924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 26730986 - 26730901
Alignment:
Q  197 tccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  26730986 tccaaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacat 26730901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 27425871 - 27425943
Alignment:
Q  19 ttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||  ||||||| |||||    
T  27425871 ttcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaac 27425943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31286474 - 31286401
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    ||||| ||||||||| |||||||| ||||| ||||||||| ||||||||||| |||||| |||||||| |||||    
T  31286474 tttctggtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttcccttttaac 31286401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 26625145 - 26625078
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||| ||||||||| |||||||||||| | ||||||||| ||||||||||| |||||| ||||||||    
T  26625145 tttctggtctattacggattccatagagggaaaattcatatatatcatttcaattttactagttccct 26625078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 26648354 - 26648287
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||| ||||||||| |||||||| ||||| ||||||||| ||||||||||| |||||| ||||||||    
T  26648354 tttctggtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttccct 26648287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 26731122 - 26731055
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||| ||||||||| |||||||||||| | ||||||||| ||||||||||| |||||| ||||||||    
T  26731122 tttctggtctattacggattccatagagggaaaattcatatatatcatttcaattttactagttccct 26731055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 26754322 - 26754255
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||| ||||||||| |||||||| ||||| ||||||||| ||||||||||| |||||| ||||||||    
T  26754322 tttctggtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttccct 26754255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27609381 - 27609454
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||| || |||||||| ||||| | ||||||| ||||||||||| |||||| |||||||| |||||    
T  27609381 tttcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaac 27609454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 27680883 - 27680810
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||| || |||||||| ||||| | ||||||| ||||||||||| |||||| |||||||| |||||    
T  27680883 tttcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaac 27680810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27696850 - 27696923
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||| || |||||||| ||||| | ||||||| ||||||||||| |||||| |||||||| |||||    
T  27696850 tttcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaac 27696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27716760 - 27716833
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||| || |||||||| ||||| | ||||||| ||||||||||| |||||| |||||||| |||||    
T  27716760 tttcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaac 27716833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 26863320 - 26863235
Alignment:
Q  195 agtccaaaatgagcaaagttgtattaaa-actaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaac 280  Q
    |||| |||| |||||||||||| ||||| ||||| ||||| ||||  |||| ||||||||||||| |||||||||||||| ||||||    
T  26863320 agtctaaaacgagcaaagttgtgttaaagactaa-taacagattgttcataaatatcaatcttactcacagtgttttcttctaaaac 26863235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 27529774 - 27529827
Alignment:
Q  229 taacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||  | |||||||||||||||| ||||||||||| |||||||||||    
T  27529774 taacaaattgttcctagatatcaatcttactcacagtgtttttttttaaaacat 27529827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26813267 - 26813211
Alignment:
Q  226 aaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    |||| ||||||||  | |||||||||||||||| |||| ||||||||||||||||||    
T  26813267 aaatgacaaattgtccctagatatcaatcttactcacaatgttttcttttaaaacat 26813211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28788159 - 28788092
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||||||||||||| ||||||   ||| | ||||||||| ||||||||||| |||||| ||||||||    
T  28788159 tttcttgtctattacggattcctcggaggggaaattcatatatatcatttcaattttactagttccct 28788092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28794280 - 28794213
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    ||||||||||||||| ||||||   ||| | ||||||||| ||||||||||| |||||| ||||||||    
T  28794280 tttcttgtctattacggattcctcggaggggaaattcatatatatcatttcaattttactagttccct 28794213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 27426049 - 27426126
Alignment:
Q  197 tccaaaatgagcaaagttgtattaaaa-ctaaataacaaattgaacatagatatcaatcttacgcacagtgttttctt 273  Q
    ||||||| |||||||||  | |||||| |||||||||||||||  | |  ||||||||||||| ||||||||||||||    
T  27426049 tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttctt 27426126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 25491578 - 25491634
Alignment:
Q  35 attccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    ||||||| ||| | ||||||||| ||||||||||| |||||| |||||||| |||||    
T  25491578 attccatggaggggaaattcatatatatcatttcaattttactagttcccttttaac 25491634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 585 - 443
Alignment:
Q  141 gaaatttacatgtaattaagtggaaaaata-tactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattga 239  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  585 gaaatttacatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattga 486  T
Q  240 acatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  485 acatagatatcaatcttactcacagtgttttcttttaaaacat 443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 3081 - 3223
Alignment:
Q  141 gaaatttacatgtaattaagtggaaaaata-tactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattga 239  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  3081 gaaatttacatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattga 3180  T
Q  240 acatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  3181 acatagatatcaatcttactcacagtgttttcttttaaaacat 3223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 12044 - 12186
Alignment:
Q  141 gaaatttacatgtaattaagtggaaaaata-tactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattga 239  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  12044 gaaatttacatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattga 12143  T
Q  240 acatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  12144 acatagatatcaatcttactcacagtgttttcttttaaaacat 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 2981 - 3048
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    |||||||||||||||  |||||  |||| | ||||||||| ||||||||||| |||||| ||||||||    
T  2981 tttcttgtctattacgaattcctcagaggggaaattcatatatatcatttcaattttactagttccct 3048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 11944 - 12011
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccct 85  Q
    |||||||||||||||  |||||  |||| | ||||||||| ||||||||||| |||||| ||||||||    
T  11944 tttcttgtctattacgaattcctcagaggggaaattcatatatatcatttcaattttactagttccct 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 9304 - 9161
Alignment:
Q  141 gaaatttacatgtaattaagtggaaaaata--tactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattg 238  Q
    |||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||    
T  9304 gaaatttacatgtaattaagtggaaaaaaaaatactaatatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattg 9205  T
Q  239 aacatagatatcaatcttacgcacagtgttttcttttaaaacat 282  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  9204 aacatagatatcaatcttactcacagtgttttcttttaaaacat 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 266757 - 266869
Alignment:
Q  170 atactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttt 269  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  266757 atactagtatgagatggtcatattttgtccaaaaagagcaaagtcgtattaaaactaaataacaaattgatcattgatatcaatcttactcacagtgttt 266856  T
Q  270 tcttttaaaacat 282  Q
    |  ||||||||||    
T  266857 ttatttaaaacat 266869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 266616 - 266689
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    ||||| ||||||||||| |||||| ||||| ||||||||| |||||||||||  ||||| |||||||| |||||    
T  266616 tttctggtctattacaggttccatcgagtggaaattcatatatatcatttcaactttactagttcccttttaac 266689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 28126064 - 28126184
Alignment:
Q  138 agagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatat-ttagtccaaaatgagcaaagttgt-attaaaact-aaataacaa 234  Q
    |||||||| ||  ||||||||||||||||||   ||||| ||||||||||||||| | ||||||||| |||  ||||  | |||||| || |||||||||    
T  28126064 agagaaatatatgtgtaattaagtggaaaaa---actagcatgagatggtcatatataagtccaaaaagagtgaagtcatgattaaagctaaaataacaa 28126160  T
Q  235 attgaacatagatatcaatcttac 258  Q
    ||||  ||||||||||||||||||    
T  28126161 attgttcatagatatcaatcttac 28126184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 28131872 - 28131996
Alignment:
Q  135 tacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatat-ttagtccaaaatgagcaaagt-tgtattaaaac-taaataa 231  Q
    ||||||||||| ||||| |||||||||||||||  | ||||| | ||||||||||||| | ||||||||| |||| ||||   | ||||| |  ||||||    
T  28131872 tacagagaaatatacatctaattaagtggaaaa--aaactagaacgagatggtcatatataagtccaaaaagagccaagtcattgttaaagcaaaaataa 28131969  T
Q  232 caaattgaacatagatatcaatcttac 258  Q
    |||||||  ||||||||||||||||||    
T  28131970 caaattgttcatagatatcaatcttac 28131996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 29272224 - 29272357
Alignment:
Q  148 acatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagat 247  Q
    ||||| |||| |||| ||| | || ||||||| ||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||    
T  29272224 acatgcaattgagtgaaaataaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagat 29272323  T
Q  248 atcaatcttacgcacagtgttttcttttaaaaca 281  Q
    ||||||||||| ||||||||||||| ||||||||    
T  29272324 atcaatcttactcacagtgttttctcttaaaaca 29272357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 29272099 - 29272172
Alignment:
Q  18 tttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||| |||||||| || || || | |||| || ||||||||||| |||||| |||||||| |||||    
T  29272099 tttcttgtctatcacagattctatggaatggagattcgtatatatcatttcaattttactagttcccttttaac 29272172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 1957 - 2058
Alignment:
Q  181 agatggtcatatttagtc-caaaatgagcaaagttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaa 279  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||    
T  1957 agatgatcatatttagttacaaaaagagcaaagttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaa 2056  T
Q  280 ca 281  Q
    ||    
T  2057 ca 2058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 61492 - 61420
Alignment:
Q  19 ttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaac 91  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||  ||||||| |||||    
T  61492 ttcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaac 61420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 61314 - 61237
Alignment:
Q  197 tccaaaatgagcaaagttgtattaaaa-ctaaataacaaattgaacatagatatcaatcttacgcacagtgttttctt 273  Q
    ||||||| |||||||||  | |||||| |||||||||||||||  | |  ||||||||||||| ||||||||||||||    
T  61314 tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttctt 61237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 18075684 - 18075613
Alignment:
Q  19 ttcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaa 90  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||  ||||||| ||||    
T  18075684 ttcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaa 18075613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 18075506 - 18075429
Alignment:
Q  197 tccaaaatgagcaaagttgtattaaaa-ctaaataacaaattgaacatagatatcaatcttacgcacagtgttttctt 273  Q
    ||||||| |||||||||  | |||||| |||||||||||||||  | |  ||||||||||||| ||||||||||||||    
T  18075506 tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttctt 18075429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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