View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_28 (Length: 245)
Name: NF14146_low_28
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 35031742 - 35031968
Alignment:
| Q |
4 |
aaatttaagaacattgtatattttctttaaaaacatatggttttaacaatattgataagtattttaaaactcccaaataaatacattttatttaattcaa |
103 |
Q |
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| T |
35031742 |
aaatttaagaacattgtatattttctttaaaaacatatggttttaacaatattgataagtattttaaaactcccaaataaatacattttatttaattcaa |
35031841 |
T |
|
| Q |
104 |
atatagactgctaaaattgcttaatannnnnnnaaatgataacaaaggtaatttttagcttcnnnnnnncctttctaaatatccttttaaattattttag |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35031842 |
atatagactgctaaaattgcttaatatttttttaaatgataacaaaggtcatttttagcttctttttttcctttctaaatatccttttaaattattttag |
35031941 |
T |
|
| Q |
204 |
attaatcacttgtgtcatttttattgt |
230 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35031942 |
attaatcacttgtgtcatttttattgt |
35031968 |
T |
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