View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_3 (Length: 579)
Name: NF14146_low_3
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 146 - 558
Target Start/End: Complemental strand, 33224496 - 33224085
Alignment:
| Q |
146 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224496 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
33224397 |
T |
|
| Q |
246 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcattgaattatttgcatgattgtgcaaatta |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224396 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattatgagtgtcgaaatatcattgttcattgaattatttgcatgattgtgcaaatta |
33224297 |
T |
|
| Q |
346 |
aatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaacattatatattcaatgggaaatagttttcaccatgacctgaaagaaaatgg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224296 |
aatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaacattatatattcaatgggaaatagttttcaccatgacctgaaagaaaatgg |
33224197 |
T |
|
| Q |
446 |
aagatttcttcgccatgagcagaaaataaatgtaggaaccaatgctcgtataagaatatatggagaaataggtatgatgcggacatcttatggtgctgaa |
545 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224196 |
aagatttcttcg-catgagcagaaaataaatgtaggaaccaatgctcgtataagaatatatggagaaataggtatgatgcggacatcttatggtgctgaa |
33224098 |
T |
|
| Q |
546 |
catgatggaccat |
558 |
Q |
| |
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||||||||||||| |
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| T |
33224097 |
catgatggaccat |
33224085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 503
Target Start/End: Complemental strand, 33227523 - 33227055
Alignment:
| Q |
36 |
atatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt-tcaagtatcctctagtcaag |
134 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | || || ||| |||||||||| |
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| T |
33227523 |
atatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaatgctccttgctaaaagtctcctctcttatggtctagtcaag |
33227424 |
T |
|
| Q |
135 |
gtatgtaacctattataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttggga |
234 |
Q |
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||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
33227423 |
gtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatttcatgagactagagatggggtgatagatgtaatattttggga |
33227324 |
T |
|
| Q |
235 |
atgtgatgagaagagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcattgaatta---tttgcat |
331 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||| |
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| T |
33227323 |
atgtgatgagaagagagatagagatgaatttaagtgtagaatgaatgttgagaaattgtaagtgttgaaatatcattgttcattgaattatattttgcat |
33227224 |
T |
|
| Q |
332 |
gattgtgcaaattaaatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaaca-ttatatattcaatgggaaatagttttcaccatga |
430 |
Q |
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||||||| ||||||||||||||||| ||| ||| | | | ||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||| |
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| T |
33227223 |
gattgtgaaaattaaatttacgatacaaa-aaaaaaaaaattaagttaacgttgttgtgaaaacatttacatattcaatgggaaatagtcttcgccatga |
33227125 |
T |
|
| Q |
431 |
cctgaaagaaaatggaagatttcttcgccatgagcagaaaataaatgtaggaaccaatgctcgtataagaata |
503 |
Q |
| |
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|||| ||||||||||||||||| ||| | ||| ||||| |||| |||||| |||||||||| ||||| |
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|
| T |
33227124 |
gctga---aaaatggaagatttcttaatcattaccaggaaatatatgtgggaaccggtgctcgtataggaata |
33227055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 33225372 - 33225234
Alignment:
| Q |
15 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33225372 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatgcttgctaattggctt |
33225273 |
T |
|
| Q |
115 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33225272 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
33225234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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