View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_33 (Length: 228)
Name: NF14146_low_33
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 9862929 - 9862794
Alignment:
| Q |
17 |
caaatagcacattttctctccttttcaacttcctccaatccctcaacacatgactttgctgcaggaaccaatccattatcttcttcatcttcgttgtttt |
116 |
Q |
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| T |
9862929 |
caaatagcacattttctctccttttcaacttcctccaatccctcaacacatgactttgccgcaggaaccaatccattatcttcttcatcttcgctgtttt |
9862830 |
T |
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| Q |
117 |
cactgctttcactattttcatcaacaaattcaaaat |
152 |
Q |
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| T |
9862829 |
cactgctttcactattttcatcaacaaattcaaaat |
9862794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 26042347 - 26042285
Alignment:
| Q |
151 |
atcagtatcatcttcactagccctatttacgccaagatcgacttgaatagaaagaaccctttg |
213 |
Q |
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|||||||||||||||||| ||||| | | || |||| ||||| ||||||||||||||||||| |
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| T |
26042347 |
atcagtatcatcttcactggcccttgtaatgctaagaacgactcgaatagaaagaaccctttg |
26042285 |
T |
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