View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_37 (Length: 206)
Name: NF14146_low_37
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 39910247 - 39910192
Alignment:
| Q |
134 |
caggcatagaatttgaagatgaagattcatcggaagaggattctgaagacgaagat |
189 |
Q |
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| T |
39910247 |
caggcatagaatttgaagatgaagattcatcggaagaggattctgaagatgaagat |
39910192 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 38980238 - 38980284
Alignment:
| Q |
134 |
caggcatagaatttgaagatgaagattcatcggaagaggattctgaa |
180 |
Q |
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| T |
38980238 |
caggcatagaatttgaagatgaagattcatcggaagaggaatctgaa |
38980284 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 4904283 - 4904336
Alignment:
| Q |
69 |
gtgcctaattgtactctttttcctccgtgcaagtatagtgctccttgtactagc |
122 |
Q |
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| T |
4904283 |
gtgcctaattgtactctttttcctccttgccggtcaagtgctccttgtgctagc |
4904336 |
T |
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