View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_5 (Length: 533)
Name: NF14146_low_5
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 72616 - 72120
Alignment:
| Q |
18 |
tagaggaaatgagatcacttatcaagtgttttcttagtttatttatgtcataatcagtgttttcattttcaatgtaaagaaatcaaattataaaaatatc |
117 |
Q |
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| T |
72616 |
tagaggaaatgagatcacttatcaagtgttttcttagtttatttatgtcataatcattgttttcattttcaatgtaaagaaatcaaattataaaaatatc |
72517 |
T |
|
| Q |
118 |
cattaaaaaagactaccattatcaggactgtgttttatttatttataaaatttgttctgtaatatgtgtgataagaacactttttgacatttgatcacat |
217 |
Q |
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| T |
72516 |
cattaaaaaagactaccattatcagtactgtgttttatttatttataaaatttgttctgtaatatgtgtgataagaacactttttgacatttgatcacat |
72417 |
T |
|
| Q |
218 |
gaaatacctgcttgaaattatgtgcatatacaagatatatgaagctaaatcaaaaaacaataaatacatcaaccgttgatagaaaatttcaagtggtttc |
317 |
Q |
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| T |
72416 |
gaaatacctgcttgaaattatgtgcatatacaagatatatgaagctaaatcaaaaaacaataaatacatcaaccgttgatagaaaatttcaagtggtttc |
72317 |
T |
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| Q |
318 |
tcatattaaacagcaataataataataatgtacatgtcagttgattaaatctacttaacttgtctaaaatgatttatcaatatatttatcttttttaatc |
417 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
72316 |
tcatattaaacagcaataataa---taatgtacatgtcagttgattaaatctacttaacttgtctaaaaagatttatcaatatatttatcttttttaatc |
72220 |
T |
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| Q |
418 |
caaacataattagaaaatgggcaacaacatcatcatgaatattcccctaatgtattgtacgtatacaccacaataatatttctttctttttggtcagtat |
517 |
Q |
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| T |
72219 |
caaacataattagaaaatgggcaacaacatcatcatgaatattcccctaatgtattgtacgtatacaccacaataatttttctttctttttggtcagtat |
72120 |
T |
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