View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14146_low_8 (Length: 429)
Name: NF14146_low_8
Description: NF14146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14146_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 193 - 413
Target Start/End: Original strand, 29237999 - 29238219
Alignment:
| Q |
193 |
gtatgcttaaagaacaataagacaaagtggctgcaagaagtatgaaacaaaaatggatctggaaatttatactcatcaaccataacatatttgcctgtat |
292 |
Q |
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| T |
29237999 |
gtatgcttaaagaataataagacaaagtggctgcaagaagtatgaaacaaaaatggatctggaaatttatactcatcaaccataacatatttgcctgtat |
29238098 |
T |
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| Q |
293 |
taacatggccattgaaggcaagacacttgtaacctttatcattgggagaatatcccaagaacacatcacaatcatcaaacctatattccagtttatgatt |
392 |
Q |
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| T |
29238099 |
taacatggccattgaaggcaagacacttgtaacctttatgattgggagaatatcccaagaacacatcacaatcatcaaacctatattccagtttatgatt |
29238198 |
T |
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| Q |
393 |
aatgcatgagttgcaacaatg |
413 |
Q |
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| T |
29238199 |
aatgcatgagttgcaacaatg |
29238219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 29237914 - 29238026
Alignment:
| Q |
66 |
ttaagacaaactctcaatccgctacgtcgagttttggattgagatttggaaggaatttgattttgtaggacaatgcatgtatgcagtatgcttaaagaat |
165 |
Q |
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| T |
29237914 |
ttaagacaaactctcaatccgctatgtccagttttggattgagatttggaaggaatttgattttgtaggacaatgcatgtatgcagtatgcttaaagaat |
29238013 |
T |
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| Q |
166 |
aataagacaaagt |
178 |
Q |
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| T |
29238014 |
aataagacaaagt |
29238026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 29237823 - 29237879
Alignment:
| Q |
11 |
cacagaccacagtgtttatataatcaatctacagtgttatctcctaacgttactttt |
67 |
Q |
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| T |
29237823 |
cacagaccacagtttttacataatcaacctacagcgttatcccctaacgttactttt |
29237879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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