View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14147_low_1 (Length: 858)
Name: NF14147_low_1
Description: NF14147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14147_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 376 - 843
Target Start/End: Original strand, 44546958 - 44547421
Alignment:
| Q |
376 |
ataattaatgtggaaagcttggtaatatgcaatcttatatttgtcaannnnnnnnnnnnctaatagtccacattttatctttcttttatgatgtgtatgt |
475 |
Q |
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| T |
44546958 |
ataattaatgtggaaagcttggtaatatgcaatcttaaatttgtcaatttttcttttttctaatagtccacattttatctttcttttatgatgtgtatgt |
44547057 |
T |
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| Q |
476 |
actatctattcgaatgccattgcttccagtcagcccatcggtaaccgttggatcgagaccaaatggttcagatcttgatcccatctaacagttagcgatg |
575 |
Q |
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| T |
44547058 |
actat----tcgaatgtcattgcttccagtcagcccatcggtaaccgttggatcgagaccaaatggttcagatcttgatcccatctaacagttagcgatg |
44547153 |
T |
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| Q |
576 |
caccgattgtgtgaatgtcggggg-ctgtcgaggcaatttgcttttgtacttatttggttggatttgtatgcactcaagtcatatgcacgcagttggaac |
674 |
Q |
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| T |
44547154 |
cactgattgtgtga-tgtcggggggctgtcaaggcaatttgcttttgtacttatttggttggatttgtatgcactcaagtcatatgcacgcagttggaac |
44547252 |
T |
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| Q |
675 |
attggcaggcgttgaatcaagatgctataagtttatttttcactgttttaatctaaaccctaaaatattgagattgaaatctagaatgtccaacttttat |
774 |
Q |
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| T |
44547253 |
attggcaggcgttgaatcaagatgctataagtttatttttcactgttttaatctaaaccctaaaatattgagattgaaatctagaatgtccaacttttat |
44547352 |
T |
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| Q |
775 |
caaacgtcgagtgcatgcgatccaaattggtacttttctgctcgattttgtttttgttggccgtctgtg |
843 |
Q |
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| T |
44547353 |
caaacgtcgagtgcatgcgatccaaattggtacttttctggtcgattttgtttttgttggccgtctgtg |
44547421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 44546601 - 44546893
Alignment:
| Q |
19 |
gatgaatcatcatgtgcaacaaagaaaaagggtaaacttggtggaaagagacgtaatgttcaaacaaatcgtgtggtttcaaagaagggtggtaggggta |
118 |
Q |
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| T |
44546601 |
gatgaatcatcatgtgcaacaaagaaaaaggataaacttggtggaaagagacgtaatgttcaaacaaatcgtgtggtttcaaagaagggtggtaggggta |
44546700 |
T |
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| Q |
119 |
ggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaacaataagaaaagtgatgtggcttcaaaaggaaataaaaatgc |
218 |
Q |
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| T |
44546701 |
ggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaacaataagaaaagtgatgtggcttcaaaaggaaataaaaatgc |
44546800 |
T |
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| Q |
219 |
tggtaaaaggaaaagaggacgtccgataaagattccagaaaagaacgatgtgaatgaggaagaaggtgtttcagctgtgaaagctacatttgt |
311 |
Q |
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| T |
44546801 |
tggtaaaaggaaaagaggacgtccgataaagattccagaaaagaacgatgtgaatgaggaagaaggtgtttcagctgtgaaagctacatttgt |
44546893 |
T |
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