View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14147_low_13 (Length: 234)
Name: NF14147_low_13
Description: NF14147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14147_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 5994689 - 5994897
Alignment:
| Q |
11 |
catcatcaacctaatagcattcccaatatcttcccttttcacaacctcactcccaaactcattccagttcctccattctttagctcccacaggaacacca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5994689 |
catcatcaacctaatagcattcccaatatcttcccttttcacaacctcactcccaaactcattccaattcctccattctttagctcccacaggaacacca |
5994788 |
T |
|
| Q |
111 |
attttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994789 |
attttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacag |
5994888 |
T |
|
| Q |
211 |
tgttccaac |
219 |
Q |
| |
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||||||||| |
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|
| T |
5994889 |
tgttccaac |
5994897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 17572312 - 17572494
Alignment:
| Q |
23 |
aatagcattcccaatatcttcccttttcacaacctcactcccaaactcattccagttcctccattctttagctcccacaggaacaccaattttcaacaca |
122 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |||| || |||||| |||||||| |
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| T |
17572312 |
aatagcctttccaatttcttcccttttcacaacctcactcccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacaca |
17572411 |
T |
|
| Q |
123 |
tcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaac |
205 |
Q |
| |
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||||| || | |||||||| ||||||||||||||||| |||||||| ||||| | || || |||||||||| |||||||| |
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| T |
17572412 |
tcaacaaccaacttctcattaaaaaaatgttcagcaaacaaaggccaagtcaccataggcaaaccaacattcatgctttcaac |
17572494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 17620395 - 17620239
Alignment:
| Q |
34 |
caatatcttcccttttcacaacctcactcccaaactcattccagttcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaag |
133 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||| ||| |||||| |||||||||||| | || |
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| T |
17620395 |
caatttcttcccttttcacaacctcactcccaaactcattccaatttctccattctttagccccaacagaaaccccaattctcaacacatcaataataat |
17620296 |
T |
|
| Q |
134 |
tttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaac |
190 |
Q |
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|||||||| ||||| || |||||||| |||||||| |||| | ||||||||||| |
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| T |
17620295 |
cttctcattaaaaaattgatcagcaaacaaaggccaactcaccataggtaacccaac |
17620239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 14709909 - 14710055
Alignment:
| Q |
23 |
aatagcattcccaatatcttcccttttcacaacctcactcccaaactcattccagttcctccattctttagctcccacaggaacaccaattttcaacaca |
122 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||| || |||||| |||||||| |
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| T |
14709909 |
aatagcctttccaatttcttcccttttcacaacctcactcccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacaca |
14710008 |
T |
|
| Q |
123 |
tcaactacaagtttctcattgaaaaaatgttcagcaaataaaggcca |
169 |
Q |
| |
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|||| | || |||||||| ||||| || |||||||| |||||||| |
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| T |
14710009 |
tcaataataatcttctcattaaaaaattgatcagcaaacaaaggcca |
14710055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 12613833 - 12613722
Alignment:
| Q |
108 |
ccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaa |
207 |
Q |
| |
|
|||||||| ||||| ||||| || | |||||||| ||||| |||||||||||||||||||| ||||| | || ||||||||||||| ||||||||| | |
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| T |
12613833 |
ccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataaaggccaagtcaccataggcaacccaacattcaaactttcaacta |
12613734 |
T |
|
| Q |
208 |
cagtgttccaac |
219 |
Q |
| |
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| |||||||||| |
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|
| T |
12613733 |
ctgtgttccaac |
12613722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 16908467 - 16908600
Alignment:
| Q |
36 |
atatcttcccttttcacaacctcactcccaaactcattccagttcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtt |
135 |
Q |
| |
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||||| ||||| ||||| || ||| ||||||||||||||| || ||||||||||| ||||| || | |||||||| |||||||||||||| | | | |
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| T |
16908467 |
atatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatc |
16908566 |
T |
|
| Q |
136 |
tctcattgaaaaaatgttcagcaaataaaggcca |
169 |
Q |
| |
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||||||||||||| ||||||||||| || ||||| |
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| T |
16908567 |
tctcattgaaaaactgttcagcaaacaatggcca |
16908600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 14870166 - 14870059
Alignment:
| Q |
62 |
cccaaactcattccagttcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaat |
161 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| || | |||||||| |||||||||||||| | | | ||||||||||||| ||||||||||| |
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| T |
14870166 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaac |
14870067 |
T |
|
| Q |
162 |
aaaggcca |
169 |
Q |
| |
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|| ||||| |
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|
| T |
14870066 |
aatggcca |
14870059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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