View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14147_low_2 (Length: 560)

Name: NF14147_low_2
Description: NF14147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14147_low_2
NF14147_low_2
[»] chr6 (1 HSPs)
chr6 (12-542)||(31273569-31274100)
[»] chr1 (5 HSPs)
chr1 (20-542)||(26215040-26215554)
chr1 (34-395)||(37737098-37737459)
chr1 (33-197)||(9802095-9802259)
chr1 (142-204)||(49639396-49639458)
chr1 (34-67)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (12-500)||(23373619-23374106)
chr3 (46-269)||(19428244-19428467)
chr3 (142-204)||(53979841-53979903)
[»] chr2 (3 HSPs)
chr2 (117-449)||(4939057-4939389)
chr2 (117-449)||(5024147-5024479)
chr2 (34-395)||(23682280-23682641)
[»] chr7 (4 HSPs)
chr7 (19-395)||(3004963-3005339)
chr7 (82-185)||(19813037-19813140)
chr7 (124-197)||(18477788-18477861)
chr7 (145-243)||(18480003-18480101)
[»] scaffold0164 (1 HSPs)
scaffold0164 (142-204)||(25469-25531)
[»] chr8 (4 HSPs)
chr8 (148-206)||(18550969-18551027)
chr8 (340-482)||(44230591-44230733)
chr8 (142-203)||(15194824-15194885)
chr8 (145-245)||(19873107-19873207)
[»] chr5 (2 HSPs)
chr5 (379-458)||(15450297-15450376)
chr5 (331-404)||(26465343-26465416)
[»] chr4 (1 HSPs)
chr4 (142-203)||(18255691-18255752)


Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 31274100 - 31273569
Alignment:
Q  12 agcagcagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaa 111  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |    
T  31274100 agcatcagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagca 31274001  T
Q  112 gaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaa 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31274000 gaatgatgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaa 31273901  T
Q  212 caagccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273900 caagccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagt 31273801  T
Q  312 gagacctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  31273800 gagacctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttggagtgagcaacttgcaaacccagaaagtacttgagt 31273701  T
Q  412 tatcctaaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataat---atctatataga 508  Q
    | |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||  |||||||||||||||||||||||   ||||| |||||    
T  31273700 tgtcctaaatctttaattttgaaagaagcacgcaggacggatttgatgttgttaaactcag--aatgaatttcctgctaaaataatatcatctacataga 31273603  T
Q  509 ccaaaatgacagtgaatgtagtagctgaagattt 542  Q
    |||||||||  |||||||||||||||||||||||    
T  31273602 ccaaaatgatggtgaatgtagtagctgaagattt 31273569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 26215554 - 26215040
Alignment:
Q  20 agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  26215554 agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg 26215455  T
Q  120 aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcctt 219  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  26215454 aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcatt 26215355  T
Q  220 ctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctg 319  Q
    ||||||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||    
T  26215354 ctgtaaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcagaaggagtggaaacagatttagagtgagtgagacctg 26215255  T
Q  320 aatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaa 419  Q
    ||| ||||||||||||||||           ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26215254 aattagcaagaagatctaga-----------ctgacaaagtgagatactttgtttagagtgagcaacttccaaacccagaaagtacttgagttgtcctaa 26215166  T
Q  420 atctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataat---atctatatagaccaaaatg 516  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||   ||||| ||| ||||||| |    
T  26215165 atctttaattttgaaagaagtatgcaggatgaatttgatgttgttaaactcagataatgaattgcctgctaaaataatatcatctacataaaccaaaagg 26215066  T
Q  517 acagtgaatgtagtagctgaagattt 542  Q
    | |||||||| ||||||||| |||||    
T  26215065 atagtgaatgcagtagctgatgattt 26215040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 34 - 395
Target Start/End: Original strand, 37737098 - 37737459
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 133  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  134 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 233  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 37737297  T
Q  234 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 333  Q
    ||||   || || ||||||||||||  ||| ||||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  37737298 atcttcataaggaggactggaatcattatgcagtttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 37737397  T
Q  334 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 395  Q
    || |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  37737398 tccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 37737459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  33 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 132  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  133 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 197  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaacctt 67  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 23373619 - 23374106
Alignment:
Q  12 agcagcagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcaga 110  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| ||     
T  23373619 agcatcagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagc 23373718  T
Q  111 agaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctacca 210  Q
    |||||| |||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  23373719 agaatggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctacca 23373818  T
Q  211 acaagccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgag 310  Q
    || ||||||||||||||| | ||  | |||||| |||||||||||||| |||||||||| | |||||  ||| |||||||||||  ||||||||||||||    
T  23373819 actagccttctgtaagcaaagatgaccgtgtat-gtggactggaatcatgatgaagttttatagaagtatcaaaaggagtggaagcaggtttagagtgag 23373917  T
Q  311 tgagacctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgag 410  Q
    |||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| ||||   | ||||||||||| ||||||  ||| || |||||    
T  23373918 tgagacctaaatcagcaagaatatctagacaatattttcccttacaaagtgagataccctgttgataatgagcaacttctaaaccctaaaaatatttgag 23374017  T
Q  411 ttatcctaaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataatatc 500  Q
     |  |||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  23374018 ct-gcctaaatcctttattttgaaagaagcatgcaggatggatttgatgttgttgaactcagataatgaatttcatgcttgaataatatc 23374106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 46 - 269
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
Q  46 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 145  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  146 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg 245  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || |||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg 19428268  T
Q  246 tggactggaatcacgatgaagttt 269  Q
     |||||||||||| ||||||||||    
T  19428267 gggactggaatcatgatgaagttt 19428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 449
Target Start/End: Original strand, 4939057 - 4939389
Alignment:
Q  117 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 216  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 4939156  T
Q  217 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 316  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  4939157 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 4939256  T
Q  317 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 416  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  4939257 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 4939356  T
Q  417 taaatctttaattttgaaagaagcatgcaagat 449  Q
    || |||||| |||||||| ||||||||||||||    
T  4939357 tagatctttgattttgaaggaagcatgcaagat 4939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 449
Target Start/End: Original strand, 5024147 - 5024479
Alignment:
Q  117 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 216  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 5024246  T
Q  217 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 316  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  5024247 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 5024346  T
Q  317 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 416  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  5024347 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 5024446  T
Q  417 taaatctttaattttgaaagaagcatgcaagat 449  Q
    || |||||| |||||||| ||||||||||||||    
T  5024447 tagatctttgattttgaaggaagcatgcaagat 5024479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 395
Target Start/End: Complemental strand, 23682641 - 23682280
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 133  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  134 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 233  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 23682442  T
Q  234 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 333  Q
    ||||   ||  | ||||||||||||  ||| | ||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  23682441 atcttcataaagaggactggaatcattatgcaatttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 23682342  T
Q  334 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 395  Q
    || |||||||| ||||| ||||| | ||| |||||||||||  | |||||||| || |||||    
T  23682341 tccagacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaacc 23682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 3005339 - 3004963
Alignment:
Q  19 gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat 118  Q
    ||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||    
T  3005339 gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat 3005240  T
Q  119 gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcct 218  Q
    | | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  ||    
T  3005239 gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatct 3005140  T
Q  219 tctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacct 318  Q
     || |||| ||| ||||||   ||  | ||||||||||||  ||| ||||| | |||| | || ||||||||||| |  |||||||| |     ||||||    
T  3005139 cctataagaagaaatatcttcataaagaggactggaatcattatgcagtttgatagaacgatctgaaggagtggatactggtttagaattgacaagacct 3005040  T
Q  319 gaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 395  Q
    ||||||||||| | ||| |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  3005039 gaatcagcaagcaaatccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 3004963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  82 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 181  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  182 ttgt 185  Q
    ||||    
T  19813137 ttgt 19813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  124 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 197  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
Q  145 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat 243  Q
    |||||||||||||||||||  || ||||| || ||||| ||||  || | |||||| || || |||||||| |||||||||||||  ||||||||||||    
T  18480003 tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat 18480101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  148 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 206  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 482
Target Start/End: Complemental strand, 44230733 - 44230591
Alignment:
Q  340 caatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaag 439  Q
    ||||||||||| ||||| |  ||||| ||||| ||  | ||||||||||| | ||| ||||  ||||| | || ||| |||||||| || ||||||||||    
T  44230733 caatattttctttgacataaagagatgccttgcttagaatgagcaacttcaagacctagaacatacttcaattgtcccaaatctttgatcttgaaagaag 44230634  T
Q  440 catgcaagatggatttgatgttgttaaactcagataatgaatt 482  Q
     |||||  |||||||||||||  | ||||||||||||||||||    
T  44230633 aatgcagaatggatttgatgtgttgaaactcagataatgaatt 44230591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 203  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
Q  145 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg 244  Q
    |||||||||||||||||||  || ||||| |  ||||| ||||  || | |||||| || || |||||||| |||||||||||||  |||||||||||||    
T  19873207 tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg 19873108  T
Q  245 g 245  Q
    |    
T  19873107 g 19873107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 15450376 - 15450297
Alignment:
Q  379 tgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaagcatgcaagatggatttgat 458  Q
    |||||||| || | ||| || ||||| |||||||  |||||||||||||| ||||| |||||||||| ||||||||||||    
T  15450376 tgagcaacctcaataccaaggaagtatttgagttggcctaaatctttaatcttgaaggaagcatgcaggatggatttgat 15450297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 26465343 - 26465416
Alignment:
Q  331 agatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagta 404  Q
    ||||| |||||||||||||| || ||||| ||||| ||||||  | | ||||||||||| ||||| ||||||||    
T  26465343 agatcaagacaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagta 26465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 203  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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