View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14147_low_3 (Length: 494)
Name: NF14147_low_3
Description: NF14147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14147_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 50 - 491
Target Start/End: Original strand, 7758056 - 7758496
Alignment:
| Q |
50 |
agttatttcagcgaaactttaccgaattaatatgactgctggatgcagcaaatgagaatgagaacgcaagttaaaaagtgcagtgatgttaaaggatcaa |
149 |
Q |
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| T |
7758056 |
agttatttccgcgaaactttaccgaattaatatgactgctggatgcagcaaatgagaatgagaacgcaagttaaaaagtgcagtgatgttaaaggatcaa |
7758155 |
T |
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| Q |
150 |
gatcatacctgaatgcaattcaagacaaatcctctcctagtgcaactattgtagacaaaaatgtaaa-ccctgatggacaaagcaa-----------cca |
237 |
Q |
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| T |
7758156 |
gatcatacctgaatgcaattcaagacaaatcctctcctagtgcaa-------------aaatgtaaaaccctgatggacaaagctatagaccttccacca |
7758242 |
T |
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| Q |
238 |
acataacttttgtggacaaaagtacaaacattctgccactacaattccttctcttttattctcttaataatcttgccaattcccctttttaacttcctac |
337 |
Q |
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| T |
7758243 |
acataacttttgtgaacaaaagtacaaacattctgccactacaattccttctcttttattctcttaataatcttgccaattcccctttttaacttcctac |
7758342 |
T |
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| Q |
338 |
aagtcnnnnnnntaagcttgacaagccaccaaccccaccctactaacttccttatcattggcatcctatacaaataaaggcacacacgtacaaataaata |
437 |
Q |
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| T |
7758343 |
aagtcaaaaaaataagcttgacaagccaccaaccccaccctactaacttccttatcattggcatcctatacaaataaaggcacacacgtacaaataaata |
7758442 |
T |
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| Q |
438 |
aactgacaataaaattagggcaagaagacccaagatcaaaccccagaataatct |
491 |
Q |
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| T |
7758443 |
aactgacaataaaattagggcaagaagacccaagatcaaaccccagaaaaatct |
7758496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 431
Target Start/End: Original strand, 7751033 - 7751355
Alignment:
| Q |
121 |
taaaaagtgcagtgatgttaaaggatcaagatcatacctgaatgcaattcaagacaaatcctctcctagtgcaactattgtagacaaaaatgtaaaccc- |
219 |
Q |
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| T |
7751033 |
taaaaaatgcagtcatgttaaaggatcaagatcatacctgaatgcaattcaagacagatcttctcctagtgcaactatttttgacagagacgtaaaaccg |
7751132 |
T |
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| Q |
220 |
tgatggacaaag-----------caaccaacataacttttgtggacaaaagtacaaacattctgccactacaattccttctcttttattctcttaataat |
308 |
Q |
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| T |
7751133 |
ttatggacaaagttatagaccttcaaccaacataacttttgtggacacatttataaacattctgccactacaattccttctcttttattctcctaataat |
7751232 |
T |
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| Q |
309 |
cttgccaattcccctttttaacttcctacaagtcnnnnnnntaagcttgacaagccaccaaccccaccctactaacttccttatcattggcatcctatac |
408 |
Q |
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| T |
7751233 |
ctcgccagttcccctgcataagtttttacaagcaaaaaaaatatgcttgacaagcaaccaaccccaccctaatatcttccttattattggtatcctatgc |
7751332 |
T |
|
| Q |
409 |
aaataaaggcacacacgtacaaa |
431 |
Q |
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| T |
7751333 |
aaataaaggcacacaagtacaaa |
7751355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 7911754 - 7911704
Alignment:
| Q |
98 |
caaatgagaatgagaacgcaagttaaaaagtgcagtgatgttaaaggatca |
148 |
Q |
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| T |
7911754 |
caaatgagaatcagaatgcaagataaaaagtgcagggatgttaaaggatca |
7911704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 7911379 - 7911331
Alignment:
| Q |
160 |
gaatgcaattcaagacaaatcctctcctagtgcaactattgtagacaaa |
208 |
Q |
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| T |
7911379 |
gaatgcaattcaagacaaattatctcatagtgcaactattatagacaaa |
7911331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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