View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14147_low_8 (Length: 266)
Name: NF14147_low_8
Description: NF14147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14147_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 36373754 - 36373507
Alignment:
| Q |
5 |
tgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgttcttcatgatcatcgatactgtttgtcgttttcct |
104 |
Q |
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| T |
36373754 |
tgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcctgttcttcatgatcatcgatactgtttgtcgttttctt |
36373655 |
T |
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| Q |
105 |
ttgaacaccttctttggattgtatagcttcccataaagttattaagcgcatatgctccttacacaaccgccttctcttaagcttctttgtgcagaaatta |
204 |
Q |
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| T |
36373654 |
ttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttacacaaccgccttctcttaaacttctttgtgcagaaatta |
36373555 |
T |
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| Q |
205 |
ttaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
252 |
Q |
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| T |
36373554 |
ttaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
36373507 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 32251765 - 32251813
Alignment:
| Q |
30 |
ggcatcagcatttaacgttctaccgtctttatgatcctgttcttcatga |
78 |
Q |
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| T |
32251765 |
ggcatcagcattgaatgttctaccgcctttatgatcttgttcttcatga |
32251813 |
T |
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