View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14148_high_13 (Length: 248)

Name: NF14148_high_13
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14148_high_13
NF14148_high_13
[»] chr5 (11 HSPs)
chr5 (23-100)||(9891643-9891720)
chr5 (166-231)||(32760636-32760700)
chr5 (167-231)||(38928840-38928903)
chr5 (166-231)||(10295356-10295426)
chr5 (168-231)||(27480308-27480375)
chr5 (166-231)||(35700934-35701003)
chr5 (169-232)||(25026811-25026872)
chr5 (192-231)||(2020885-2020924)
chr5 (166-211)||(37508551-37508596)
chr5 (199-231)||(15058585-15058617)
chr5 (166-194)||(35708615-35708643)
[»] chr4 (18 HSPs)
chr4 (165-231)||(13270411-13270476)
chr4 (166-231)||(7182329-7182398)
chr4 (23-95)||(31256194-31256266)
chr4 (166-231)||(38365903-38365972)
chr4 (166-222)||(41844316-41844371)
chr4 (166-231)||(904076-904140)
chr4 (166-231)||(13269831-13269896)
chr4 (166-231)||(38317367-38317436)
chr4 (168-228)||(47669689-47669748)
chr4 (166-231)||(41363950-41364019)
chr4 (166-231)||(48830953-48831012)
chr4 (23-95)||(31239697-31239769)
chr4 (166-219)||(32060563-32060620)
chr4 (166-221)||(36151518-36151572)
chr4 (168-231)||(16535567-16535634)
chr4 (166-231)||(17622601-17622666)
chr4 (195-231)||(30765609-30765645)
chr4 (166-231)||(32948655-32948724)
[»] chr8 (10 HSPs)
chr8 (166-231)||(36906066-36906130)
chr8 (168-231)||(4734634-4734696)
chr8 (166-231)||(3404711-3404780)
chr8 (166-231)||(2474904-2474968)
chr8 (166-231)||(6692-6761)
chr8 (168-231)||(34304597-34304659)
chr8 (168-219)||(37659681-37659736)
chr8 (167-219)||(15108394-15108445)
chr8 (166-198)||(43007928-43007960)
chr8 (166-231)||(43733258-43733327)
[»] chr2 (13 HSPs)
chr2 (166-231)||(30312543-30312607)
chr2 (166-231)||(38293763-38293827)
chr2 (166-231)||(44137031-44137095)
chr2 (166-231)||(18780256-18780325)
chr2 (166-231)||(12964110-12964179)
chr2 (166-231)||(31550387-31550456)
chr2 (166-231)||(16519226-16519295)
chr2 (166-231)||(25960748-25960817)
chr2 (192-231)||(18826370-18826409)
chr2 (166-228)||(3039089-3039155)
chr2 (166-211)||(8411089-8411133)
chr2 (166-228)||(10165289-10165355)
chr2 (166-194)||(1725778-1725806)
[»] chr1 (24 HSPs)
chr1 (166-231)||(50476425-50476489)
chr1 (166-231)||(1688354-1688418)
chr1 (167-231)||(17688218-17688281)
chr1 (166-231)||(27499858-27499927)
chr1 (166-221)||(1278353-1278407)
chr1 (167-228)||(28773520-28773580)
chr1 (166-231)||(32295523-32295587)
chr1 (166-231)||(42488765-42488829)
chr1 (166-231)||(12293684-12293753)
chr1 (167-231)||(14152580-14152643)
chr1 (166-231)||(26940480-26940549)
chr1 (166-231)||(40707336-40707405)
chr1 (166-231)||(47905827-47905896)
chr1 (166-228)||(896636-896697)
chr1 (166-231)||(26757293-26757358)
chr1 (167-231)||(7401665-7401733)
chr1 (192-231)||(23871601-23871640)
chr1 (166-221)||(39179254-39179313)
chr1 (166-231)||(8156477-8156541)
chr1 (194-231)||(13255250-13255287)
chr1 (166-228)||(38794844-38794910)
chr1 (194-231)||(50586954-50586991)
chr1 (199-231)||(13061538-13061570)
chr1 (166-231)||(51246701-51246770)
[»] chr7 (14 HSPs)
chr7 (166-231)||(33113779-33113843)
chr7 (167-231)||(3571897-3571960)
chr7 (47-100)||(1095186-1095239)
chr7 (166-231)||(43188749-43188813)
chr7 (166-231)||(3658649-3658718)
chr7 (166-231)||(5968181-5968249)
chr7 (166-231)||(33406770-33406839)
chr7 (187-231)||(34652189-34652233)
chr7 (192-231)||(42113095-42113134)
chr7 (193-231)||(19644206-19644244)
chr7 (193-231)||(23620931-23620969)
chr7 (189-231)||(41002388-41002430)
chr7 (166-231)||(33810350-33810419)
chr7 (192-228)||(46745727-46745763)
[»] chr3 (14 HSPs)
chr3 (23-100)||(16130746-16130823)
chr3 (166-231)||(42583409-42583473)
chr3 (166-231)||(38526032-38526096)
chr3 (168-231)||(46312559-46312621)
chr3 (166-231)||(36796307-36796366)
chr3 (166-231)||(41962113-41962172)
chr3 (166-231)||(45555511-45555576)
chr3 (166-227)||(38592854-38592916)
chr3 (167-231)||(44412292-44412356)
chr3 (166-231)||(49855945-49856009)
chr3 (166-194)||(27922147-27922175)
chr3 (167-215)||(47434472-47434519)
chr3 (166-231)||(47789584-47789653)
chr3 (168-228)||(49683142-49683201)
[»] chr6 (5 HSPs)
chr6 (167-231)||(26574533-26574596)
chr6 (166-231)||(24734761-24734825)
chr6 (166-231)||(2365735-2365804)
chr6 (193-231)||(1029198-1029236)
chr6 (168-231)||(26481265-26481332)
[»] scaffold0245 (1 HSPs)
scaffold0245 (166-221)||(4030-4084)
[»] scaffold0229 (1 HSPs)
scaffold0229 (166-221)||(4361-4415)
[»] scaffold0952 (1 HSPs)
scaffold0952 (192-231)||(3810-3849)
[»] scaffold0028 (1 HSPs)
scaffold0028 (166-231)||(35592-35661)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 9891643 - 9891720
Alignment:
Q  23 ctttctactcgattagatttgtgcagtaatcttgcaactagatctaagaggcaatttgccgtgttgttctgattttgg 100  Q
    |||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||| || |||| ||||||||||||    
T  9891643 ctttctacgcaattagatttgtgcggtaatctttcaactagatctaagaggcaattttccctgtttttctgattttgg 9891720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 32760636 - 32760700
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  32760636 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaggtggaagaa 32760700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 38928903 - 38928840
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||||||||||| |||||||||    
T  38928903 ctttgtttgggagttgggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 38928840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 10295356 - 10295426
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg-----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||     ||| ||||||||||||||||||||||| |||||||||    
T  10295356 gctttgattgggagtttgaaggggaggggatgaggagggttttggaaaaaaggaaggagcaagtggaagaa 10295426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 27480375 - 27480308
Alignment:
Q  168 tttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||||||||    |||||| |||||||||||||||||| |||| |||||||||    
T  27480375 tttgtttgggagtttgaaggggagaggaggggagggttttggaaaaaaggaagaagcaagtggaagaa 27480308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 35700934 - 35701003
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| ||||||||||||||||||||||| ||| |||||    
T  35700934 gctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtgaaagaa 35701003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 25026811 - 25026872
Alignment:
Q  169 ttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaag 232  Q
    ||||||||||||||| ||| |||||| || ||||||||||||||||||||||| ||||||||||    
T  25026811 ttgtttgggagtttggaggagagggg-ag-gttttggaaaaaaggaaggagcaagtggaagaag 25026872  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 2020885 - 2020924
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  2020885 ggggagggttttggaaaaaaggaaggagcaagtggaagaa 2020924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 37508596 - 37508551
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaa 211  Q
    |||||||||||||||||| |||||  |||||| |||||||||||||    
T  37508596 gctttgtttgggagtttggagggggaggggagggttttggaaaaaa 37508551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 15058617 - 15058585
Alignment:
Q  199 gttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||||||| |||||||||    
T  15058617 gttttggaaaaaaggaaggagcaagtggaagaa 15058585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 35708615 - 35708643
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg 194  Q
    |||||||||||||||||||||||||||||    
T  35708615 gctttgtttgggagtttgaaggggagggg 35708643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 13270476 - 13270411
Alignment:
Q  165 cgctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  13270476 cgctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 13270411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 7182398 - 7182329
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| ||||||||||||||||||||||| |||||||||    
T  7182398 gctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaa 7182329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 31256194 - 31256266
Alignment:
Q  23 ctttctactcgattagatttgtgcagtaatcttgcaactagatctaagaggcaatttgccgtgttgttctgat 95  Q
    |||||||| || |||||||| |||||||||||| |||||||||||||||||| |||| || |||| |||||||    
T  31256194 ctttctacgcggttagatttttgcagtaatcttccaactagatctaagaggctattttccttgtttttctgat 31256266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 38365903 - 38365972
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||||||||| ||||||||||||||||| |||||||||    
T  38365903 gctttgtttgggagtttggaggggaggggaggggagagttttagaaaaaaggaaggagcaagtggaagaa 38365972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 41844316 - 41844371
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcat 222  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  41844316 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcat 41844371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 904076 - 904140
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| |||||| ||||| ||||||| ||||||||| |||||||||    
T  904076 gctttgtttgggagtttggagggga-ggggagggttttagaaaaaaagaaggagcaagtggaagaa 904140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 13269831 - 13269896
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||   |||| |||||| ||||||| ||||||||||||||| |||||||||    
T  13269831 gctttgtttgggagtttgggagggaaggggagggttttgggaaaaaggaaggagcaagtggaagaa 13269896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 38317436 - 38317367
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||| | ||||||||||    ||| ||||||||||||||||||||||| |||||||||    
T  38317436 gctttgtttgggagttgggaggggaggggaggagagggttttggaaaaaaggaaggagcaagtggaagaa 38317367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 47669689 - 47669748
Alignment:
Q  168 tttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| |||||||| ||||||    
T  47669689 tttgtttgggagtttgaagggga-ggggagggttttgaaaaaaagaaaggagcaagtggaa 47669748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 41364019 - 41363950
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg-gaga---gttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| | ||   ||||||||||||||||||||||| |||||||||    
T  41364019 gctttgtttgggagtttggaggggaggggagggaacggttttggaaaaaaggaaggagcaagtggaagaa 41363950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 48831012 - 48830953
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||      |||||||||||||||||||||| |||||||||    
T  48831012 gctttgtttgggagtttggaggggaggg------ttttggaaaaaaggaaggagcaagtggaagaa 48830953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 31239697 - 31239769
Alignment:
Q  23 ctttctactcgattagatttgtgcagtaatcttgcaactagatctaagaggcaatttgccgtgttgttctgat 95  Q
    |||||||| |||| ||||| ||| || |||||| |||||||||||||||||| |||| || |||| |||||||    
T  31239697 ctttctacgcgataagattcgtgtagcaatcttccaactagatctaagaggctattttccttgtttttctgat 31239769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 32060563 - 32060620
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggag 219  Q
    |||||||||||||||||| ||||||||    |||||||||||| ||||||||||||||    
T  32060563 gctttgtttgggagtttggaggggaggagatgggagagttttgaaaaaaaggaaggag 32060620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 36151572 - 36151518
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagca 221  Q
    |||||||||| ||||||| |||||||||| || |||||||||||||||||| ||||    
T  36151572 gctttgtttgagagtttggaggggagggg-agggttttggaaaaaaggaagaagca 36151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 16535567 - 16535634
Alignment:
Q  168 tttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||  |||||||    |||||| |||| |||||||||||||||||| |||||||||    
T  16535567 tttgtttgggagtttagaggggagaggaggggagggtttgggaaaaaaggaaggagcaagtggaagaa 16535634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 17622666 - 17622601
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttgg-aaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||| ||| |||||| |||||| ||||||| |||||| ||||||||| |||||||||    
T  17622666 gctttgtttgggaggttggagggga-ggggagggttttggaaaaaaaagaaggagcaagtggaagaa 17622601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 30765609 - 30765645
Alignment:
Q  195 gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  30765609 gagagttttagaaaaaaggaaggagcaagtggaagaa 30765645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 32948724 - 32948655
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| | ||||||||    ||| |||| |||||||||||||||||| ||| |||||    
T  32948724 gctttgtttgggagtttggaagggaggggaggggagggtttcggaaaaaaggaaggagcaagtgaaagaa 32948655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 36906066 - 36906130
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  36906066 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 36906130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 4734696 - 4734634
Alignment:
Q  168 tttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  4734696 tttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 4734634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 3404780 - 3404711
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| ||||||||||||||||||||||| |||||||||    
T  3404780 gctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaa 3404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 2474968 - 2474904
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| ||||||  ||||| |||||||||||||| | |||||||||    
T  2474968 gctttgtttgggagtttggagggga-ggggaggattttgaaaaaaaggaaggagtaagtggaagaa 2474904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 6692 - 6761
Alignment:
Q  166 gctttgtttgggagtttgaag----gggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||    |||  |||||| ||||||||||||||||||||||| |||||||||    
T  6692 gctttgtttgggagtttggaggataggggaggggagggttttggaaaaaaggaaggagcaagtggaagaa 6761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 34304597 - 34304659
Alignment:
Q  168 tttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| |||||  | |||||||| ||| |||||||||||||||||||||| |||||||||    
T  34304597 tttgtttggaagtttataagggaggggaaga-ttttggaaaaaaggaaggagcaagtggaagaa 34304659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 37659736 - 37659681
Alignment:
Q  168 tttgtttgggagtttgaagggga----gggggagagttttggaaaaaaggaaggag 219  Q
    |||||||||||||||||||||||     |||||| |||||||||||||||||||||    
T  37659736 tttgtttgggagtttgaaggggaagggaggggagggttttggaaaaaaggaaggag 37659681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 15108445 - 15108394
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggag 219  Q
    ||||||||||||||||| |||||| ||| || |||||| ||||||||||||||    
T  15108445 ctttgtttgggagtttggagggga-gggaagggttttgaaaaaaaggaaggag 15108394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 43007960 - 43007928
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggaga 198  Q
    ||||||||||||||||||||||||| |||||||    
T  43007960 gctttgtttgggagtttgaaggggaaggggaga 43007928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 43733327 - 43733258
Alignment:
Q  166 gctttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||    |||||| |||||||||||| |||| ||||| | |||||||    
T  43733327 gctttgtttgggagtttggaggggaggaaaggggagggttttggaaaaagggaatgagcaagaggaagaa 43733258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 30312607 - 30312543
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  30312607 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 30312543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 38293763 - 38293827
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||| ||||| |||||||||    
T  38293763 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaatgagcaagtggaagaa 38293827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 44137031 - 44137095
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||||||||||  ||||||||    
T  44137031 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaaatggaagaa 44137095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 18780256 - 18780325
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| ||||||||||||||||||||||| |||||||||    
T  18780256 gctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcacgtggaagaa 18780325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 12964179 - 12964110
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||| | ||||||||    ||||| ||||||||||||||||||||||| |||||||||    
T  12964179 gctttgtttgggagttgggaggggaggagaggggagggttttggaaaaaaggaaggagcaagtggaagaa 12964110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 31550456 - 31550387
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| || |||||||    ||| ||||||||||||||||||||||| |||||||||    
T  31550456 gctttgtttgggagtttggagtggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaa 31550387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 16519295 - 16519226
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||| ||||||| |||||| |    ||||| ||||||||||||||||||||||| |||||||||    
T  16519295 gctttgtttgcgagtttggaggggaagagaggggagggttttggaaaaaaggaaggagcaagtggaagaa 16519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 25960817 - 25960748
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| ||||||||||||||||| |    ||| |||||||||||||| |||||||| |||||||||    
T  25960817 gctttgtttaggagtttgaaggggaggagatgagagggttttggaaaaaagaaaggagcaagtggaagaa 25960748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 18826409 - 18826370
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  18826409 ggggagggttttggaaaaaaggaaggagcaagtggaagaa 18826370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 3039155 - 3039089
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||||||||||||||| ||||||| ||    ||| |||||| |||||||||||||||| ||||||    
T  3039155 gctttgtttgggagtttggaggggagaggaggagagggttttgaaaaaaaggaaggagcaagtggaa 3039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 8411133 - 8411089
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaa 211  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||    
T  8411133 gctttgtttgggagtttggagggga-ggggagggttttggaaaaaa 8411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 10165289 - 10165355
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||||||||||||||| ||||||| ||    ||||||||||| |||||||||| |||| ||||||    
T  10165289 gctttgtttgggagtttggaggggagaggaagggagagttttggtaaaaaggaagaagcaagtggaa 10165355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 1725778 - 1725806
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg 194  Q
    |||||||||||||||||||||||||||||    
T  1725778 gctttgtttgggagtttgaaggggagggg 1725806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 50476425 - 50476489
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  50476425 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 50476489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 1688418 - 1688354
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  1688418 gctttgtttggaagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 1688354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 17688218 - 17688281
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  17688218 ctttgtttgagagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 17688281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 27499858 - 27499927
Alignment:
Q  166 gctttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||||||||||    |||||| |||||| |||||||||||||||| |||||||||    
T  27499858 gctttgtttgggagtttgaaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaa 27499927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 1278353 - 1278407
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagca 221  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  1278353 gctttgtttgggagtttggaggggagggg-agagttttggaaacaaggaaggagca 1278407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 28773580 - 28773520
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    ||||||||||||||||| |||||||||| || |||||||||||||| ||| |||||||||||    
T  28773580 ctttgtttgggagtttggaggggagggg-agggttttggaaaaaagaaagtagcatgtggaa 28773520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 32295523 - 32295587
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||  |||||||||| ||| |||||||||||| ||||||||| |||||||||    
T  32295523 gctttgtttgggagtttagaggggaggggaaga-ttttggaaaaaaagaaggagcaagtggaagaa 32295587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 42488829 - 42488765
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||| ||||| || ||||||||||||||||| ||||| |||||||||    
T  42488829 gctttgtttgggagtttggagggaagggg-agggttttggaaaaaaggaatgagcaagtggaagaa 42488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 12293684 - 12293753
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||    ||||| |||||||||||||||||||| || |||||||||    
T  12293684 gctttgtttgggagtttggaggggaggagaggggagggttttggaaaaaaggaaggatcaagtggaagaa 12293753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 14152580 - 14152643
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| || |||||| |||||||||    
T  14152580 ctttgtttgggagtttggagggga-ggggagggttttggaaaaaatgatggagcaagtggaagaa 14152643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 26940480 - 26940549
Alignment:
Q  166 gctttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||| ||||||| |||||||    |||||| ||||||||||||||||||||||| |||||||||    
T  26940480 gctttgtttgagagtttggaggggagaggaggggagggttttggaaaaaaggaaggagcaagtggaagaa 26940549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 40707405 - 40707336
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| |    || |||||||||||||||||||||||||| |||||||||    
T  40707405 gctttgtttgggagtttggaggggaagagagggaagagttttggaaaaaaggaaggagcaagtggaagaa 40707336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 47905896 - 47905827
Alignment:
Q  166 gctttgtttgggagtttgaaggggaggg----ggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||    |||| ||||||||||||||||||||| | |||||||||    
T  47905896 gctttgtttgggagtttggaggggagggaaggggagggttttggaaaaaaggaaggagtaagtggaagaa 47905827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 896697 - 896636
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||||||||||||||| |||||| ||||||  |||||||||||| ||||||||| ||||||    
T  896697 gctttgtttgggagtttggagggga-ggggaggattttggaaaaaaagaaggagcaagtggaa 896636  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 26757358 - 26757293
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttgg-aaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||  ||||||||    
T  26757358 gctttgtttgggagtttggagggga-ggggagggttttggaaaaaaaggaaggagcaaatggaagaa 26757293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 7401733 - 7401665
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||| | ||||||||    ||| ||||| ||||||||||||||||| |||||||||    
T  7401733 ctttgtttgggagtttggaagggaggggaggggagggttttagaaaaaaggaaggagcaggtggaagaa 7401665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 23871640 - 23871601
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  23871640 ggggagggttttggaaaaaaggaaggagcaagtggaagaa 23871601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 39179313 - 39179254
Alignment:
Q  166 gctttgtttgggagtttgaagggga----gggggagagttttggaaaaaaggaaggagca 221  Q
    |||||||||||||||||| ||||||     |||||| |||||||||||||||||||||||    
T  39179313 gctttgtttgggagtttggaggggaagggaggggagggttttggaaaaaaggaaggagca 39179254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 8156541 - 8156477
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| |||||| |||||| || |||| |||||||| ||| |||||    
T  8156541 gctttgtttgggagtttggagggga-ggggagggttttgaaagaaagaaaggagcaagtgaaagaa 8156477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 13255250 - 13255287
Alignment:
Q  194 ggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  13255250 ggagggttttggaaaaaaggaaggagcaagtggaagaa 13255287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 38794844 - 38794910
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||||||||||||||| ||| ||||||    ||| |||||| |||||||||||||||| ||||||    
T  38794844 gctttgtttgggagtttggaggcgaggggagtggagggttttgaaaaaaaggaaggagcaagtggaa 38794910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 50586954 - 50586991
Alignment:
Q  194 ggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  50586954 ggagagctttggaaaaaaggaaggagcaagtggaagaa 50586991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 13061570 - 13061538
Alignment:
Q  199 gttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||||||||| |||||||||    
T  13061570 gttttggaaaaaaggaaggagcaagtggaagaa 13061538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 51246770 - 51246701
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| |||||| ||||||| |||||||| ||| |||||    
T  51246770 gctttgtttgggagtttggaggggaggggaggagagggttttgaaaaaaagaaaggagcaagtgaaagaa 51246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 33113843 - 33113779
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||| ||||||||||||||||| |||||||||    
T  33113843 gctttgtttgggagtttggaggggagggg-agggttttagaaaaaaggaaggagcaagtggaagaa 33113779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 3571960 - 3571897
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||||||||||| |||||||||    
T  3571960 ctttgtttgggagttgggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 3571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 1095239 - 1095186
Alignment:
Q  47 agtaatcttgcaactagatctaagaggcaatttgccgtgttgttctgattttgg 100  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||||||||||||    
T  1095239 agtaatctttcaactagatctaagaggcaattttccctgtttttctgattttgg 1095186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 43188749 - 43188813
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||| |||||||||||| |||||||||| || ||||||||||||||||||||||| | |||||||    
T  43188749 gctttttttgggagtttggaggggagggg-agggttttggaaaaaaggaaggagcaaggggaagaa 43188813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 3658718 - 3658649
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| |||||||||| |||||||||||| |||||||||    
T  3658718 gctttgtttgggagtttggaggggaggggaggggagggttttggaaagaaggaaggagcaagtggaagaa 3658649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 5968249 - 5968181
Alignment:
Q  166 gctttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||||| |||||    |||||| ||||||| ||||||||||||||| |||||||||    
T  5968249 gctttgtttgggagtttgaaagggaggggaggggagggttttgg-aaaaaggaaggagcaagtggaagaa 5968181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 33406839 - 33406770
Alignment:
Q  166 gctttgtttgggagtttgaaggggag----ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||    |||||| |||||  |||||||||||||||| |||||||||    
T  33406839 gctttgtttgggagtttggaggggaggggaggggagggttttaaaaaaaaggaaggagcaagtggaagaa 33406770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 34652233 - 34652189
Alignment:
Q  187 gggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||    
T  34652233 gggagggggagggttttgggaaaaaggaaggagcaagtggaagaa 34652189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 42113134 - 42113095
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  42113134 ggggagggttttggaaaaaaggaaggagcaagtggaagaa 42113095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 19644206 - 19644244
Alignment:
Q  193 gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  19644206 gggagggttttggaaaaaaggaaggagcaagtggaagaa 19644244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 23620969 - 23620931
Alignment:
Q  193 gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  23620969 gggagggttttggaaaaaaggaaggagcaagtggaagaa 23620931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 41002430 - 41002388
Alignment:
Q  189 gagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||    
T  41002430 gagggggagggttttggaaaaaatgaaggagcaagtggaagaa 41002388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 33810419 - 33810350
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| || | |||    |||||||||||||||||||||||| || | |||||||||    
T  33810419 gctttgtttgggagtttggagcgaaggggatgggagagttttggaaaaaaggaagaagtaagtggaagaa 33810350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 46745763 - 46745727
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  46745763 ggggagggttttggaaaaaaggaaggagcaagtggaa 46745727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 16130823 - 16130746
Alignment:
Q  23 ctttctactcgattagatttgtgcagtaatcttgcaactagatctaagaggcaatttgccgtgttgttctgattttgg 100  Q
    |||||||  ||| ||||||||||||  | |||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  16130823 ctttctatgcgagtagatttgtgcataagtcttccaactagatctaagaggcaatttgccttgtttttctgattttgg 16130746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 42583473 - 42583409
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||| ||||| |||||||||    
T  42583473 gctttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaatgagcaagtggaagaa 42583409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 38526032 - 38526096
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||||||| || | |||||||||    
T  38526032 gctttgtttgagagtttggaggggagggg-agagttttggaaaaaaggaagaagtaagtggaagaa 38526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 46312621 - 46312559
Alignment:
Q  168 tttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||||||  | |||||||||    
T  46312621 tttgtttgggagtttggaggggagggg-agggttttggaaaaaaggaaggactaagtggaagaa 46312559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 36796307 - 36796366
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||      |||||||||||||||||||||| |||||||||    
T  36796307 gctttgtttgggagtttggaggggaggg------ttttggaaaaaaggaaggagcaagtggaagaa 36796366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 41962172 - 41962113
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||||||      |||||||||||||||||||||| |||||||||    
T  41962172 gctttgtttgggagtttggaggggaggg------ttttggaaaaaaggaaggagcaagtggaagaa 41962113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 45555511 - 45555576
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaa-ggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||||| |||||||||| |||||||||    
T  45555511 gctttgtttgggagtttggagggga-tgggagggttttggaaaaaatggaaggagcaagtggaagaa 45555576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 38592854 - 38592916
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg-gagagttttggaaaaaaggaaggagcatgtgga 227  Q
    |||||||||||||||||| |||||||||| | | |||||||||||||| || ||||| |||||    
T  38592854 gctttgtttgggagtttggaggggaggggagggggttttggaaaaaagaaatgagcaagtgga 38592916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 44412356 - 44412292
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaa-aggaaggagcatgtggaagaa 231  Q
    ||||||||||||||||| |||||| ||| || |||||| ||||| ||||||||||| |||||||||    
T  44412356 ctttgtttgggagtttggagggga-gggaagggttttgaaaaaataggaaggagcaagtggaagaa 44412292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 49856009 - 49855945
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||| ||||||| ||||||| || ||||||| |||||||| ||||||||| ||| |||||    
T  49856009 gctttgtttgcgagtttggaggggagaggaagagttt-ggaaaaaatgaaggagcaagtgaaagaa 49855945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 27922175 - 27922147
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg 194  Q
    |||||||||||||||||||||||||||||    
T  27922175 gctttgtttgggagtttgaaggggagggg 27922147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 47434519 - 47434472
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaa 215  Q
    ||||||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  47434519 ctttgtttgagagtttggaggggaggggaaga-ttttggaaaaaaggaa 47434472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 47789653 - 47789584
Alignment:
Q  166 gctttgtttgggagtttgaagggga----gggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||     |||||| ||| | ||||||||||||||||| |||||||||    
T  47789653 gctttgtttgggagtttggaggggaagggaggggagggttgtagaaaaaaggaaggagcaagtggaagaa 47789584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 49683201 - 49683142
Alignment:
Q  168 tttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaa 228  Q
    |||||||||||||||| || ||||||| || ||||| ||||||||||| ||||| ||||||    
T  49683201 tttgtttgggagtttggagaggagggg-agggttttagaaaaaaggaatgagcaagtggaa 49683142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 26574596 - 26574533
Alignment:
Q  167 ctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  26574596 ctttgtttgagagtttggaggggagggg-agggttttggaaaaaaggaaggagcaagtggaagaa 26574533  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 24734761 - 24734825
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| |||||| ||| || ||||||||||||||||| ||||| |||||||||    
T  24734761 gctttgtttgggagtttggaggggaaggg-agggttttggaaaaaaggaacgagcaagtggaagaa 24734825  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 2365804 - 2365735
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||||| ||||||||||    ||| |||||| |||||||||||||||| |||||||||    
T  2365804 gctttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaa 2365735  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 1029198 - 1029236
Alignment:
Q  193 gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  1029198 gggagggttttggaaaaaaggaaggagcaagtggaagaa 1029236  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 26481332 - 26481265
Alignment:
Q  168 tttgtttgggagtttgaaggggagggg----gagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||||||| ||||||||||    ||| |||||| ||||||||||| |||| |||||||||    
T  26481332 tttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaagtagcaagtggaagaa 26481265  T

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Target: scaffold0245 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 4030 - 4084
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagca 221  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  4030 gctttgtttgggagtttggaggggagggg-agagttttggaaacaaggaaggagca 4084  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 4361 - 4415
Alignment:
Q  166 gctttgtttgggagtttgaaggggagggggagagttttggaaaaaaggaaggagca 221  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  4361 gctttgtttgggagtttggaggggagggg-agagttttggaaacaaggaaggagca 4415  T

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Target: scaffold0952 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 3849 - 3810
Alignment:
Q  192 ggggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  3849 ggggagggttttggaaaaaaggaaggagcaagtggaagaa 3810  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 35661 - 35592
Alignment:
Q  166 gctttgtttgggagtttgaaggggagg----gggagagttttggaaaaaaggaaggagcatgtggaagaa 231  Q
    |||||||||||| ||||| || |||||    ||||| ||||||||||||||||||||||| ||| |||||    
T  35661 gctttgtttgggtgtttggagaggaggcgaggggagggttttggaaaaaaggaaggagcaagtgaaagaa 35592  T

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