View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_high_8 (Length: 301)
Name: NF14148_high_8
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 40454750 - 40454614
Alignment:
| Q |
3 |
gaataaaaatagctgcctttaattttgtcacatcatttatacaatgtaaattttctcttgggagaaattaggccaatccttattcaaagataaagtttct |
102 |
Q |
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| T |
40454750 |
gaataaaaatagctgcctttaattttgtcacatcatttatacaatgtaaattttctcttgggagaaattaggccaatccttattcaaagataaagtttct |
40454651 |
T |
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| Q |
103 |
accaattaaaactataaaatctcatcaaaagctacac |
139 |
Q |
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| T |
40454650 |
accaattaaaactataaaatctcatcaaaagctacac |
40454614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 40454584 - 40454448
Alignment:
| Q |
144 |
tcaaagcatacaaaatcatcaacagtctgtctattagatcgtatttgttttctttgcttcagcagcagcagattctggccaaatttgtgcagtcttcacc |
243 |
Q |
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| T |
40454584 |
tcaaagcatacaaaatcatcaacagtct----attatatcgtatttgttttctttgcttcagcagtagcagattctggccaaatttgtgcagtcttcacc |
40454489 |
T |
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| Q |
244 |
tttgatatgcttgccattacgctcaatggagttacatcacc |
284 |
Q |
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| T |
40454488 |
tttgatatgcttgccattacgctcaatggagttacatcacc |
40454448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 29145935 - 29145873
Alignment:
| Q |
219 |
tggccaaatttgtgcagtcttcacctttgatatgcttgccattacgctcaatggagttacatc |
281 |
Q |
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| T |
29145935 |
tggccaaaattgtgcattcttcacctttgatatgcttgccaacacactaaatggagtcacatc |
29145873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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