View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14148_low_1 (Length: 764)

Name: NF14148_low_1
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14148_low_1
NF14148_low_1
[»] scaffold0565 (1 HSPs)
scaffold0565 (610-748)||(1242-1380)
[»] chr4 (8 HSPs)
chr4 (363-434)||(12912618-12912689)
chr4 (382-449)||(38539472-38539539)
chr4 (369-413)||(8826895-8826939)
chr4 (363-421)||(18423952-18424010)
chr4 (364-414)||(19596059-19596109)
chr4 (363-421)||(24798187-24798245)
chr4 (371-421)||(38949704-38949754)
chr4 (369-434)||(39533822-39533887)
[»] chr1 (5 HSPs)
chr1 (363-434)||(1597249-1597320)
chr1 (363-421)||(13877007-13877065)
chr1 (369-421)||(3013676-3013728)
chr1 (369-421)||(26937883-26937935)
chr1 (369-421)||(41007699-41007751)
[»] chr7 (2 HSPs)
chr7 (363-447)||(21096183-21096267)
chr7 (364-421)||(22752582-22752639)
[»] chr3 (5 HSPs)
chr3 (367-434)||(24270462-24270529)
chr3 (363-412)||(47334702-47334751)
chr3 (366-421)||(27224602-27224657)
chr3 (363-421)||(34327568-34327626)
chr3 (369-450)||(10872665-10872746)
[»] chr5 (1 HSPs)
chr5 (369-421)||(30780092-30780144)
[»] chr2 (4 HSPs)
chr2 (369-441)||(32460808-32460880)
chr2 (363-417)||(800753-800807)
chr2 (367-421)||(10222036-10222090)
chr2 (369-434)||(45473086-45473151)
[»] chr6 (1 HSPs)
chr6 (384-434)||(1874885-1874935)
[»] scaffold1137 (1 HSPs)
scaffold1137 (369-434)||(1071-1136)
[»] chr8 (2 HSPs)
chr8 (369-434)||(1897867-1897932)
chr8 (384-421)||(3687567-3687604)


Alignment Details
Target: scaffold0565 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 610 - 748
Target Start/End: Complemental strand, 1380 - 1242
Alignment:
Q  610 aaagatatataaacgtctaagctagcctgtgcgttacgcacgggtctataactagtttaatacatttgagagacattttgttcccttagaggaaaagtgg 709  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1380 aaagatatataaacgtctaagctagcatgtgcgttacgcacgggtctataactagtttaatacatttgagagacattttgttcccttagaggaaaagtgg 1281  T
Q  710 ctttatccagtttgaagaatgcaccaagtaggtagttgt 748  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1280 ctttatccagtttgaagaatgcaccaagtaggtagttgt 1242  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 12912689 - 12912618
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    ||||||||||||||| |  |||||||||||||| ||||||||| |||||| |||||||| || |||||||||    
T  12912689 atgatttttattatataccatatacatcatttaatgaataaatctaaaatgttaatttttacttataataat 12912618  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 38539539 - 38539472
Alignment:
Q  382 atatacatcatttactgaataaatttaaaatattaattttcacgtataataataattggaaggtgtat 449  Q
    |||||||||||||| |||||||||||||||||| ||||||  | ||||||| | ||||||||||||||    
T  38539539 atatacatcatttattgaataaatttaaaatataaatttttgcttataatagtgattggaaggtgtat 38539472  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 8826939 - 8826895
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaata 413  Q
    |||||||||||| | |||||||||||| |||||||||||||||||    
T  8826939 tttattatagatcacatacatcatttaatgaataaatttaaaata 8826895  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 18423952 - 18424010
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    ||||| ||||||||| || |||||||||||||| ||||||||| ||| ||||| |||||    
T  18423952 atgatctttattataaatcatatacatcatttaatgaataaatctaatatatttatttt 18424010  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 19596059 - 19596109
Alignment:
Q  364 tgatttttattatagataatatacatcatttactgaataaatttaaaatat 414  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||    
T  19596059 tgatttttaatatagatcatatatatcatttattgaatgaatttaaaatat 19596109  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 24798187 - 24798245
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    ||||| |||||||||||  |  ||||||||||| ||||| |||||||||||||||||||    
T  24798187 atgatctttattatagaccacgtacatcatttaatgaatgaatttaaaatattaatttt 24798245  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 38949754 - 38949704
Alignment:
Q  371 tattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||||| | || ||||||||||| ||||| |||||||||||||||||||    
T  38949754 tattatagttcatttacatcatttattgaattaatttaaaatattaatttt 38949704  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Original strand, 39533822 - 39533887
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    |||||||||||| | |||||||||||| ||||||||| |||||| || |||||  | |||||||||    
T  39533822 tttattatagatcacatacatcatttaatgaataaatctaaaatgttgatttttgcttataataat 39533887  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 1597249 - 1597320
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    ||||| |||||||| ||  ||||| |||||||| ||||||||||||||||||||||||| || |||||||||    
T  1597249 atgatctttattatcgaccatatatatcatttaatgaataaatttaaaatattaatttttacttataataat 1597320  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 13877065 - 13877007
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    ||||| ||||||||| || |||||||||||||| |||||||||||||||| ||||||||    
T  13877065 atgatctttattatatatcatatacatcatttaatgaataaatttaaaatgttaatttt 13877007  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 3013676 - 3013728
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    ||||||||| ||||||||||||||||| ||||| ||| |||||| ||||||||    
T  3013676 tttattataaataatatacatcatttaatgaatgaatgtaaaatgttaatttt 3013728  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 26937935 - 26937883
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  26937935 tttattgtagacaatatacatcatttattgaatgaatttaaaatatgaatttt 26937883  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 41007751 - 41007699
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||||||||  | |||||||||||| ||||||||||||||||||| |||||    
T  41007751 tttattatagaccacatacatcatttaatgaataaatttaaaatattgatttt 41007699  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 21096267 - 21096183
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataataattggaaggtgt 447  Q
    ||||| |||||||||||| | ||| || ||||| ||||||||| |||||||||||||||  | |||||||||||| ||| |||||    
T  21096267 atgatatttattatagatcacatatattatttaatgaataaatctaaaatattaatttttgcttataataataatcggagggtgt 21096183  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 22752639 - 22752582
Alignment:
Q  364 tgatttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||||||||||| ||||||||||| ||||| ||||| ||| |||||||| ||||||    
T  22752639 tgatttttattataaataatatacattatttattgaatgaatctaaaatataaatttt 22752582  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 24270529 - 24270462
Alignment:
Q  367 tttttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    |||||||||||||| ||||| |||||||| | ||||||||||||||||| |||||  | |||||||||    
T  24270529 tttttattatagattatatatatcatttaatcaataaatttaaaatattgatttttgcttataataat 24270462  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 47334702 - 47334751
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaat 412  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  47334702 atgatttttattatagatcatatacatcatttaatgaatgaatctaaaat 47334751  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 27224657 - 27224602
Alignment:
Q  366 atttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    ||||||||||||||| | |||||||||||| ||||||||| |||||| || |||||    
T  27224657 atttttattatagatcacatacatcatttaatgaataaatctaaaatgttgatttt 27224602  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 34327568 - 34327626
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||||| |||||| || |||||||||||||| ||||| ||| |||||| ||||||||    
T  34327568 atgattttgattataaatcatatacatcatttaatgaatgaatctaaaatgttaatttt 34327626  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 10872746 - 10872665
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataataattggaaggtgtatt 450  Q
    ||||||||| || | |||||||||||| ||||| ||||||||||||| |||||  | ||||||| | | |||| ||||||||    
T  10872746 tttattataaatcacatacatcatttaatgaatgaatttaaaatattgatttttgcttataatagtgactggagggtgtatt 10872665  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 30780144 - 30780092
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||| |||| || |||||||||||| |||||||||||||||||| ||||||    
T  30780144 tttattgtagacaacatacatcatttattgaataaatttaaaatatgaatttt 30780092  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 32460808 - 32460880
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataataattgga 441  Q
    |||||||||||  | |||||||||||| | |||||||||||||||||| |||| |  ||||||| ||||||||    
T  32460808 tttattatagaacacatacatcatttaataaataaatttaaaatattattttttatttataatagtaattgga 32460880  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 800753 - 800807
Alignment:
Q  363 atgatttttattatagataatatacatcatttactgaataaatttaaaatattaa 417  Q
    ||||||||||||||| |  |||||||||||||| ||||| |||||||||| ||||    
T  800753 atgatttttattataaaccatatacatcatttaatgaatgaatttaaaatgttaa 800807  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 10222036 - 10222090
Alignment:
Q  367 tttttattatagataatatacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||||| |||| ||||||||||||||| ||||| | |||||||||| ||||||    
T  10222036 tttttattgtagacaatatacatcatttattgaatgattttaaaatatgaatttt 10222090  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 45473151 - 45473086
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    ||||||||||| || |||||||||||| ||||| ||| |||||| |||||||| |  |||||||||    
T  45473151 tttattatagacaacatacatcatttaatgaatgaatctaaaattttaatttttaattataataat 45473086  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 1874935 - 1874885
Alignment:
Q  384 atacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    |||||| ||| ||||||||||| ||||||||||||||| || |||||||||    
T  1874935 atacattattcactgaataaatctaaaatattaatttttacttataataat 1874885  T

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Target: scaffold1137 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 1136 - 1071
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    ||||||||| || |||||||||||||| ||||||||| |||||| || ||||| || |||| ||||    
T  1136 tttattatatatcatatacatcatttaatgaataaatataaaatgttgatttttacttatactaat 1071  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 1897932 - 1897867
Alignment:
Q  369 tttattatagataatatacatcatttactgaataaatttaaaatattaattttcacgtataataat 434  Q
    ||||||||||| || |||||| ||||| ||||||||| ||||||||| |||||  | |||||||||    
T  1897932 tttattatagacaacatacattatttaatgaataaatataaaatattgatttttgcttataataat 1897867  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 3687604 - 3687567
Alignment:
Q  384 atacatcatttactgaataaatttaaaatattaatttt 421  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3687604 atacattatttattgaataaatttaaaatattaatttt 3687567  T

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