View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14148_low_16 (Length: 237)

Name: NF14148_low_16
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14148_low_16
NF14148_low_16
[»] chr8 (3 HSPs)
chr8 (138-221)||(29570471-29570554)
chr8 (128-220)||(10909386-10909478)
chr8 (136-212)||(1557368-1557444)
[»] chr3 (2 HSPs)
chr3 (110-220)||(26697792-26697902)
chr3 (127-205)||(24837113-24837191)
[»] chr4 (6 HSPs)
chr4 (125-212)||(13725948-13726035)
chr4 (130-219)||(28572129-28572218)
chr4 (151-220)||(41029652-41029721)
chr4 (120-195)||(1611635-1611710)
chr4 (127-205)||(28111058-28111136)
chr4 (128-221)||(26728994-26729087)
[»] chr7 (2 HSPs)
chr7 (125-202)||(11888986-11889063)
chr7 (120-176)||(34800092-34800148)
[»] chr5 (1 HSPs)
chr5 (127-219)||(34506065-34506157)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 29570554 - 29570471
Alignment:
Q  138 taaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaagg 221  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  29570554 taaggttttgtcttggaggtggactttgagtagtttcaatttgcgggcatgtttgttttatgaatggagttggaacccaaaagg 29570471  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 10909478 - 10909386
Alignment:
Q  128 tggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaag 220  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||  |  ||||||| || |||||||||||||| |||||||| |||||||    
T  10909478 tggaggcgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaaag 10909386  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 1557368 - 1557444
Alignment:
Q  136 attaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaa 212  Q
    |||||||| ||||| |||||||||  |||| |||| ||||  ||||| || ||||||||||| ||||||| ||||||    
T  1557368 attaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaa 1557444  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 26697902 - 26697792
Alignment:
Q  110 gcgaaatggaggagttagtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttg 209  Q
    ||||| |||||||| ||||||||| | ||||||||||||| ||||| |||  ||||||| | |||||||||||||| ||||||||||| ||||||| |||    
T  26697902 gcgaagtggaggagatagtggaggatgttaaggttttgtcgtggagatggtgtttgagtcggttgaatttgccggcttgtttgttttacgaatggaattg 26697803  T
Q  210 gaacccaaaag 220  Q
    |||||||||||    
T  26697802 gaacccaaaag 26697792  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 24837113 - 24837191
Alignment:
Q  127 gtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatgga 205  Q
    ||||||| ||||||||| ||  |||||||||||  ||||||| ||||||| |||||||  ||||||| |||||||||||    
T  24837113 gtggaggatattaaggtgttagcttggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatgga 24837191  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 13725948 - 13726035
Alignment:
Q  125 tagtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaa 212  Q
    |||||||||| |||||||||||  | |||||||||||||||||| ||||  |  || |||| || |||||||||||||||||||||||    
T  13725948 tagtggaggcaattaaggtttttccgtggaggtggactttgagtcgtttacaagtgtcggcttgcttgttttatgaatggagttggaa 13726035  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 28572129 - 28572218
Alignment:
Q  130 gaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaa 219  Q
    |||||||| ||||||||||  | ||||||||| |||| | | ||||  |||||| | || ||||||||||||||||||||||||||||||    
T  28572129 gaggctataaaggttttgttgttgaggtggacgttgactcgattgagcttgccgacttgcttgttttatgaatggagttggaacccaaaa 28572218  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 41029652 - 41029721
Alignment:
Q  151 tggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaag 220  Q
    ||||| ||| |||||||| | |||||  || |||| |||||||||||||||||| |||||||||||||||    
T  41029652 tggagatggtctttgagtcggttgaaggtgacggcttgtttgttttatgaatggtgttggaacccaaaag 41029721  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 1611635 - 1611710
Alignment:
Q  120 ggagttagtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttt 195  Q
    ||||||||||||||| |||||||||||||  |||||||| |  |||||| |||||||  |||||||  ||||||||    
T  1611635 ggagttagtggaggcgattaaggttttgttgtggaggtgcatgttgagtcgtttgaacgtgccggcgagtttgttt 1611710  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 28111136 - 28111058
Alignment:
Q  127 gtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatgga 205  Q
    ||||||| ||||||||| ||  | |||||||||  ||||||| ||||||| |||||||  ||||||| |||||||||||    
T  28111136 gtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatgga 28111058  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 26728994 - 26729087
Alignment:
Q  128 tggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaagg 221  Q
    |||||||||| || ||  |||| ||||| |||||||| ||| |||||||  |  |||| |||||||||||||| ||||||||||| || |||||    
T  26728994 tggaggctatgaaagtgctgtcgtggagatggactttaagtcgtttgaagatatcggcttgtttgttttatgagtggagttggaatccgaaagg 26729087  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 11888986 - 11889063
Alignment:
Q  125 tagtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaat 202  Q
    |||||||||| |||||||||||||| ||||||||||  |||||| |||||||  | || ||  |||||||||||||||    
T  11888986 tagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtaccagcgagtttgttttatgaat 11889063  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 34800148 - 34800092
Alignment:
Q  120 ggagttagtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaa 176  Q
    ||||||||||||||| |||||||||||||  ||||| ||||  |||||| |||||||    
T  34800148 ggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaa 34800092  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 34506157 - 34506065
Alignment:
Q  127 gtggaggctattaaggttttgtcttggaggtggactttgagtagtttgaatttgccggcatgtttgttttatgaatggagttggaacccaaaa 219  Q
    ||||||| ||||||||| ||| | ||| | |||  ||||||| |||||| || |||| | | |||||||||||||||| | ||||||||||||    
T  34506157 gtggaggatattaaggtgttggcgtggcgttggtgtttgagttgtttgagttcgccgacttttttgttttatgaatggcggtggaacccaaaa 34506065  T

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