View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14148_low_18 (Length: 203)

Name: NF14148_low_18

Description: NF14148

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14148_low_18

[»] chr7 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 152; E-Value: 1e-80

Query Start/End: Original strand, 18 - 190

Target Start/End: Original strand, 6357712 - 6357888

Alignment:

Q	18	gtttccaacaaacttggagttaccaaatgctcgtcgtgagatatagagctgggaaaagatcgaatcaattgtagaatcagtcaca----tagtttcttca	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	6357712	gtttccaacaaacttggagttaccaaatgctcgttgtgagatatagagctgggaaaagatcgaatcgattgtagaatcagtcacaatcttagtttcttca	6357811	T

Q	114	aaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttccttcttcgacaaccatatt	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6357812	aaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttccttcttcgacaaccatatt	6357888	T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 109 - 173

Target Start/End: Original strand, 7588651 - 7588715

Alignment:

Q	109	cttcaaaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttcct	173	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	7588651	cttcaaagacaaatttattccttatacaccaaatattccacatgatcaaaggagctatgattcct	7588715	T

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