View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_low_2 (Length: 466)
Name: NF14148_low_2
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 49180708 - 49180320
Alignment:
| Q |
11 |
cacagaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacac |
110 |
Q |
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| T |
49180708 |
cacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacac |
49180609 |
T |
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| Q |
111 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaacca |
210 |
Q |
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| T |
49180608 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccattttttc-gcaaggattgggcatatcattttatctgtaataacatgtgaggaacca |
49180510 |
T |
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| Q |
211 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgt |
310 |
Q |
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| T |
49180509 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgt |
49180410 |
T |
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| Q |
311 |
ggcatatagccatttttgtaagtcactgcattaaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
400 |
Q |
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| T |
49180409 |
ggcatatagccatttttgtaagtcactgcattgaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
49180320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 49180247 - 49180194
Alignment:
| Q |
395 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaag |
448 |
Q |
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| T |
49180247 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaag |
49180194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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